============================================================================
Welcome to the SIB BLAST Network Service
If results of this search are reported or published, please mention that
the computation was performed at the SIB using the BLAST network service.
The SIB BLAST network service uses a server developed at SIB and the NCBI
BLAST 2 software. It is implemented on hardware provided by HP.
In case of problems, please contact us.
NCBI BLAST program reference [PMID:9254694]:
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W.,
Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein
database search programs. Nucleic Acids Res. 25:3389-3402(1997).
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Query length: 932 AA
Date run: 2003-05-01 15:06:18 UTC+0100 on sib-blast.unil.ch
Program: NCBI BLASTP 2.2.5 [Nov-16-2002]
Database: XXswissprot Viruses
8482 sequences; 3,552,911 total letters
Swiss-Prot Release 41.6 of 30-Apr-2003
List of potentially matching sequences
Alignments
| sp | P59641 R1AB_CVHSA | Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes: Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; Papain-like proteinase (EC 3.4.24.-) (NSP1); 3C-like proteinase (EC 3.4.24.-) (3CL-PRO) (NSP2); HD2 (NSP3); NSP4; NSP5; NSP6; Growth factor-like (NSP7); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (NSP9); Helicase (Hel) (NSP10); NSP11; NSP12; NSP13] [Human coronavirus (strain SARS) (HCoV-SARS)] | 7073 AA align |
Score = 1937 bits (5017), Expect = 0.0
Identities = 932/932 (100%), Positives = 932/932 (100%)
Query: 1 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 60
SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD
Sbjct: 4370 SADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKD 4429
Query: 61 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 120
EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT
Sbjct: 4430 EEGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLT 4489
Query: 121 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 180
KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE
Sbjct: 4490 KYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGE 4549
Query: 181 RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 240
RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL
Sbjct: 4550 RVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSL 4609
Query: 241 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 300
LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN
Sbjct: 4610 LMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCIN 4669
Query: 301 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 360
CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN
Sbjct: 4670 CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVN 4729
Query: 361 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 420
LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY
Sbjct: 4730 LHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFY 4789
Query: 421 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 480
DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF
Sbjct: 4790 DFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF 4849
Query: 481 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 540
DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT
Sbjct: 4850 DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTIT 4909
Query: 541 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 600
QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN
Sbjct: 4910 QMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN 4969
Query: 601 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA 660
MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA
Sbjct: 4970 MLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECA 5029
Query: 661 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 720
QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV
Sbjct: 5030 QVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV 5089
Query: 721 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 780
RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK
Sbjct: 5090 RNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK 5149
Query: 781 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 840
NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA
Sbjct: 5150 NFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGA 5209
Query: 841 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 900
GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML
Sbjct: 5210 GCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML 5269
Query: 901 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932
DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Sbjct: 5270 DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5301
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| sp | P16342 RRPB_CVMA5 | RNA-directed RNA polymerase (EC 2.7.7.48) (ORF1B) [F2] [Murine coronavirus MHV (strain A59)] | 2733 AA align |
Score = 1281 bits (3316), Expect = 0.0
Identities = 612/924 (66%), Positives = 737/924 (79%), Gaps = 5/924 (0%)
Query: 10 RVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNLLDS 68
R+ G S ARL PC +G TDV RAFDI N AG + K NCCRFQ DE+GN LD
Sbjct: 20 RIRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCCRFQRVDEDGNKLDK 79
Query: 69 YFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMADLV 128
+FVVKR + Y E+ Y L K+C VA H+FF F V+G VPHI R+ L+K+TM DL
Sbjct: 80 FFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKDLSKFTMLDLC 139
Query: 129 YALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLK 188
YALRHFD +C TLKEIL+TY C++ YF KKDWYDFVENPDI+ VY LG ++LL
Sbjct: 140 YALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKLGPIFNRALLN 199
Query: 189 TVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLT 248
T +F DA+ +AG+VGVLTLDNQDL G WYDFGDFV+ PGCGV + DSYYS +MP+LT+
Sbjct: 200 TAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYYSYMMPMLTMC 259
Query: 249 RALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCIL 308
AL +E ++ + +DL++YDFT+ +L LF +YFK+W TYHPN C DDRCI+
Sbjct: 260 HALDSELFVNGTYRE----FDLVQYDFTDFKLELFTKYFKHWSMTYHPNTCECEDDRCII 315
Query: 309 HCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSF 368
HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H RLS
Sbjct: 316 HCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRYRLSL 375
Query: 369 KELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGF 428
K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F +SKG
Sbjct: 376 KDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFILSKGL 435
Query: 429 FKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCI 488
KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFV+EVV+KYF+ Y+GGCI
Sbjct: 436 LKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNKYFEIYEGGCI 495
Query: 489 NANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAI 548
A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNLKYAI
Sbjct: 496 PATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAI 555
Query: 549 SAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSD 608
SAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ + D
Sbjct: 556 SAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKD 615
Query: 609 VETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVM 668
V++P LMGWDYPKCDRAMPN+LRI++SLVLARKH++CC+ + RFYRLANECAQVLSE+VM
Sbjct: 616 VDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVM 675
Query: 669 CGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLY 728
CGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ RLY
Sbjct: 676 CGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLY 735
Query: 729 ECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAVLYY 788
+YR VD FV E+Y +L KHFSMMILSDD VVCYNS +A++G +A+I F+ VLYY
Sbjct: 736 SNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYY 795
Query: 789 QNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIV 848
QNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFVDD++
Sbjct: 796 QNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFVDDLL 855
Query: 849 KTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLT 908
KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +LD YSV+L+
Sbjct: 856 KTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSYSVILS 915
Query: 909 NDNTSRYWEPEFYEAMYTPHTVLQ 932
+ ++ + FY+ MY VLQ
Sbjct: 916 TCDGQKFTDETFYKNMYLRSAVLQ 939
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| sp | P29982 RRPB_CVMJH | RNA-directed RNA polymerase (EC 2.7.7.48) (ORF1B) [Murine coronavirus MHV (strain JHM)] | 2731 AA align |
Score = 1274 bits (3298), Expect = 0.0
Identities = 611/927 (65%), Positives = 734/927 (79%), Gaps = 5/927 (0%)
Query: 7 FLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNL 65
F RV G S ARL PC +G TDV RAFDI N AG + K NC RFQ DEEGN
Sbjct: 17 FFKRVRGTSVNARLVPCASGLDTDVQLRAFDICNANRAGIGLYYKVNCFRFQRVDEEGNK 76
Query: 66 LDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMA 125
LD +FVVKR + Y E+ Y L KDC VA H+FF F V+G VPHI R+ L+K+TM
Sbjct: 77 LDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKDLSKFTML 136
Query: 126 DLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQS 185
DL YALRHFD +C TLKEIL+TY CD+ YF KKDWYDFVENPDI+ VY LG ++
Sbjct: 137 DLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKLGPIFNRA 196
Query: 186 LLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPIL 245
LL T F D + +AG+VGVLTLDNQDL G WYDFGDFV+ P CGV + DSYYS +MP+L
Sbjct: 197 LLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYYSYMMPML 256
Query: 246 TLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDR 305
T+ AL +E ++ + +DL++YDFT+ +L LF++YFK+W TYHPN C DDR
Sbjct: 257 TMCHALDSELFVNGTYRE----FDLVQYDFTDFKLELFNKYFKHWSMTYHPNTSECEDDR 312
Query: 306 CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSR 365
CI+HCANFN+LFS V P T FGPLVR+IFVDGVPFVVS GYH++ELGVV N DV+ H R
Sbjct: 313 CIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMDVDTHRYR 372
Query: 366 LSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVS 425
LS K+LL+YAADPA+H AS + LLD RT CFSVAA+T+ V FQTVKPGNFN+DFY+F +S
Sbjct: 373 LSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQDFYEFILS 432
Query: 426 KGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDG 485
KG KEGSSV+LKHFFF QDGNAAI+DY+YY+YNLPTM DI+QLLFVVEVV+KYF+ Y+G
Sbjct: 433 KGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNKYFEIYEG 492
Query: 486 GCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLK 545
GCI A QVIVNN DKSAG+PFNK+GKARLYY+++S+E+QD ++AYTKRNV+PT+TQMNLK
Sbjct: 493 GCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLK 552
Query: 546 YAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV 605
YAISAKNRARTVAGVSI STMT R FHQK LKSIAATRG VVIGT+KFYGGW +ML+ +
Sbjct: 553 YAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRL 612
Query: 606 YSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSE 665
DV++P LMGWDYPKCDRAMPN+LRI++SLVLARKH++CC+ + RFYRLANECAQVL E
Sbjct: 613 IKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLGE 672
Query: 666 MVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQH 725
+VMCGG YVKPGGTSSGDATTA+ANSVFNICQAV+ANV +L++ +G+KI D +R LQ
Sbjct: 673 IVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQK 732
Query: 726 RLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAV 785
RLY +YR VD FV E+Y +L KHFSM+ILSDD VVCYNS +A++G +A+I +F+ V
Sbjct: 733 RLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIANISDFQQV 792
Query: 786 LYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVD 845
LYYQNNVFMSEAKCW ETD+ KGPHEFCSQHTMLVK D VYLPYPDPSRILGAGCFVD
Sbjct: 793 LYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRILGAGCFVD 852
Query: 846 DIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV 905
D++KTD L+IERFVSLAIDAYPL H N EY +VF +YL+YI+KL+++L +LD SV
Sbjct: 853 DLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQILDSISV 912
Query: 906 MLTNDNTSRYWEPEFYEAMYTPHTVLQ 932
+L+ + ++ + FY+ MY V+Q
Sbjct: 913 ILSTCDGQKFTDETFYKNMYLRSAVMQ 939
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| sp | Q05002 R1AB_CVH22 | Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes: Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Protein p9; Papain-like proteinase 1 (EC 3.4.24.-); Papain-like proteinase 2 (EC 3.4.24.-); 3C-like proteinase (EC 3.4.24.-) (3CL-PRO); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp); Helicase (Hel)] [Human coronavirus (strain 229E) (HCoV-229E)] | 6758 AA align |
Score = 1150 bits (2974), Expect = 0.0
Identities = 546/929 (58%), Positives = 695/929 (74%), Gaps = 6/929 (0%)
Query: 5 STFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGN 64
+++LNRV G SAARL PC GT D RAFD+YN+ + K LK+NC RF+ D++
Sbjct: 4072 NSYLNRVRGSSAARLEPCN-GTDIDYCVRAFDVYNKDASFIGKNLKSNCVRFKNVDKD-- 4128
Query: 65 LLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTM 124
D++++VKR S HE+++YNL+K C AVA HDFF + + ++SRQ LTKYTM
Sbjct: 4129 --DAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQDLTKYTM 4186
Query: 125 ADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQ 184
DL +ALR+FDE +C+ KEILV CC DYF K+W+D +EN DI RVYA LG+ V
Sbjct: 4187 MDLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAALGKVVAN 4246
Query: 185 SLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPI 244
++LK V FCD M G+VGVLTLDNQDLNGN+YDFGDFV PG G+P SYYS +MP+
Sbjct: 4247 AMLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYYSYMMPV 4306
Query: 245 LTLTRALAAESHMDADLAKPLIK-WDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLD 303
+ +T LA+E M +D+ K +DLLKYDFTE + LF++YFKYW Q YHP+C++C D
Sbjct: 4307 MGMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPDCVDCHD 4366
Query: 304 DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS 363
+ CILHC+NFN LF+T P T+FGPL RK+F+DGVP V + GYHF++LG+V N+DVN HS
Sbjct: 4367 EMCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNKDVNTHS 4426
Query: 364 SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFA 423
+RL+ ELL + DP + AS L+DKRT CFSVAAL+ + QTVKPG+FNK+FYDF
Sbjct: 4427 TRLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNKEFYDFL 4486
Query: 424 VSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCY 483
S+GFF EGS + LKHFFF Q G+AAI D+DYYRYN PTM DI Q +V +YFDCY
Sbjct: 4487 RSQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAARYFDCY 4546
Query: 484 DGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMN 543
+GGCI + +V+V NL+KSAG+P NK+GKA LYY+S+SYE+QDA+F+ TKRN++PT+TQ+N
Sbjct: 4547 EGGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILPTMTQLN 4606
Query: 544 LKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK 603
LKYAIS K RARTV GVS+ +TMT RQFHQK LKSI ATR ATVVIGT+KFYGGW NMLK
Sbjct: 4607 LKYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGGWDNMLK 4666
Query: 604 TVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVL 663
+ +DV+ P LMGWDYPKCDRAMP+M+R++++++L KH TCC S +FYRL+NE AQVL
Sbjct: 4667 NLMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSNELAQVL 4726
Query: 664 SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNL 723
+E+V G Y KPGGT+SGDATTAYANSVFNI QAV++N+N +LS + + + V+ L
Sbjct: 4727 TEVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNNFNVKKL 4786
Query: 724 QHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFK 783
Q +LY+ YRN +VD FVD+FY YL+KHFSMMILSDD+VVCYN YA G +A I FK
Sbjct: 4787 QRQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIADISAFK 4846
Query: 784 AVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCF 843
A LYYQN VFMS AKCWTE DL+ GPHEFCSQHTM + + YLPYPDPSRI+ AG F
Sbjct: 4847 ATLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRIISAGVF 4906
Query: 844 VDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY 903
VDDI KTD +++ER+VSLAIDAYPL+KHP EY VF+ L +++ L+ L +L+ +
Sbjct: 4907 VDDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNEGVLESF 4966
Query: 904 SVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932
SV L +++ S++W+ FY +MY TVLQ
Sbjct: 4967 SVTLLDEHESKFWDESFYASMYEKSTVLQ 4995
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| sp | P26314 RRPB_IBVB | RNA-directed RNA polymerase (ORF1B) (EC 2.7.7.48) [F2] [Avian infectious bronchitis virus (strain Beaudette) (IBV)] | 2652 AA align |
Score = 1127 bits (2915), Expect = 0.0
Identities = 556/892 (62%), Positives = 675/892 (75%), Gaps = 13/892 (1%)
Query: 49 LKTNCCRFQE--KDEEGNL--LDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKF 104
LK NC RFQE E+GNL LDSYFVVK+ T SNY+HE++ Y +K A HDFF F
Sbjct: 5 LKRNCARFQELRDTEDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVF 63
Query: 105 RVDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDD----YFNKK 160
+ + +ISRQRLTKYTM D YALRHFD +C+ LKEILVTY C +D + K
Sbjct: 64 NKN---IYNISRQRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENK 120
Query: 161 DWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFG 220
DWYD +EN + A +G VR++LL ++F + M + G VGV+TLDNQDLNG +YDFG
Sbjct: 121 DWYDPIENSKYYVMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFG 180
Query: 221 DFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERL 280
DF + APG GVP+ D+YYS +MPI+ +T ALA E + + D+ K +DLLKYD+TEE+
Sbjct: 181 DFQKTAPGAGVPVFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQ 240
Query: 281 CLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPF 340
LF +YFKYWDQ YHPNC +C DDRC++HCANFN+LFST+ P TSFG L RK+FVDGVPF
Sbjct: 241 ELFQKYFKYWDQEYHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPF 300
Query: 341 VVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA 400
+ + GYH +ELGV+ NQD + S++ +L+ + DPA+ + N L+D RT+CFSV A
Sbjct: 301 IATCGYHSKELGVIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCA 360
Query: 401 LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNL 460
LT+ + QTVKPG+FNKDFYDFA G FKEGSS+ LKHFF+ Q GNAAI+DYDYYRYN
Sbjct: 361 LTSGITHQTVKPGHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNR 420
Query: 461 PTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMS 520
PTM DI QLLF +EV KYF+CY+GGCI A+QV+VNNLDKSAG+PFNK+GKARLYY+ MS
Sbjct: 421 PTMFDICQLLFCLEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MS 479
Query: 521 YEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIA 580
E+QD LF TK+NV+PTITQMNLKYAISAKNRARTVAGVSI STMTNRQFHQK+LKSI
Sbjct: 480 LEEQDQLFEITKKNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIV 539
Query: 581 ATRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLAR 640
TR A+VVIGT+KFYGGW NML+ + VE P LMGWDYPKCDRAMPN+LRI ASLVLAR
Sbjct: 540 NTRNASVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLAR 599
Query: 641 KHNTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV 700
KH CC+ S R YRL NECAQVLSE V+ G +YVKPGGTSSGDATTAYANSVFNI QA
Sbjct: 600 KHTNCCSWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQAT 659
Query: 701 TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSD 760
+ANV LLS I +++LQ+ LY+ +YR + D FV++FY+YL K+FS+MILSD
Sbjct: 660 SANVARLLSVITRDIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSD 719
Query: 761 DAVVCYNSNYAAQGLVASIKNFKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLV 820
D VVCYN+ A QGLVA I F+ VLYYQNNVFM+++KCW E DL KGPHEFCSQHTMLV
Sbjct: 720 DGVVCYNNTLAKQGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLV 779
Query: 821 KQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADV 880
+ + YLPYPDPSRILGA FVDD+ KT+ ++ER+++LAIDAYPL H N+EY V
Sbjct: 780 EVDGEPKYLPYPDPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKV 839
Query: 881 FHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 932
F + L YIRKL+ EL+ +ML YS ++ D S++WE EFYE MY T LQ
Sbjct: 840 FFVLLAYIRKLYQELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 891
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| sp | P18458 RRPB_BEV | RNA-directed RNA polymerase (EC 2.7.7.48) (ORF1B) [POL] [Berne virus (BEV)] | 2291 AA align |
Score = 134 bits (337), Expect = 8e-32
Identities = 119/485 (24%), Positives = 223/485 (45%), Gaps = 38/485 (7%)
Query: 419 FYDFAVSKGFFKEGSSV--ELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVV 476
FYD + + G K+F++ + A++D YY Y + L V + +
Sbjct: 343 FYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGALADVCYYDYQGTGFYSPKLLAGVYDFM 402
Query: 477 DKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKAR-LYYDSMSYEDQDALFAYTKRNV 535
+ +CY IN + + N G + Y ++ E+ LF Y ++
Sbjct: 403 KRVTECYR---INERFTYEQAKPRKSSMGINITGYQQDAVYRALGPENIARLFEYAQKAP 459
Query: 536 IPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKL---LKSIAATRGATVVIGTS 592
+P T++ K+A+SAK RARTV+ S ++ R H+ + + +A G +IG S
Sbjct: 460 LPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPVTSKMVEVAQNSGGFCLIGVS 519
Query: 593 KFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRF 652
K+ + LK Y +E + G DY KCDR P R + + +L +
Sbjct: 520 KYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTFPLSFRALTAALLYELGEW----DEKS 575
Query: 653 YRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLS--T 710
+ NE + + ++C G L KPGGTSSGDATTA++N+ +N +LS +
Sbjct: 576 WLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNTFYNYMVHYVVAFKTILSDLS 635
Query: 711 DGNKIADKYVRNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNY 770
+GNK+ +R H Y + V + +++ + + ++ + LSDD+ + ++
Sbjct: 636 EGNKV----MRIAAHNAYTT--GDYQVFNTLLEDQF---QTNYFLNFLSDDSFI-FSKPE 685
Query: 771 AAQGLVASIKNFKAVLYYQNNVFMSEAKCWTETDLTKGP-HEFCSQHTMLVKQGDDYVYL 829
A + + + +NF L + + + K W+ TKG EFCS H ++K +Y +L
Sbjct: 686 ALK--IFTCENFSNKLQTILHTKVDQTKSWS----TKGHIEEFCSAH--IIKTDGEYHFL 737
Query: 830 PYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIR 889
P R+L + +D + +D + RFV++ ++ +++ + + +F ++L ++
Sbjct: 738 --PSRGRLLASLLILDKL--SDVDIYYMRFVAILCESAVYSRYQPEFFNGLFQVFLDKVQ 793
Query: 890 KLHDE 894
+ +
Sbjct: 794 QFRKD 798
Score = 41.2 bits (95), Expect = 9e-04
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 36 DIYNEKVAGFAKFLKTNCCRFQEKDEEGNLLDSYFVVKR-HTMSNYQHEETIYNLVKDCP 94
D+ E AG K K+N + + + F++KR S + +T + P
Sbjct: 31 DLATEYNAGIVKVNKSNTHSVEYQSKR-------FMIKRVKDQSEFALAKTAF-----LP 78
Query: 95 AVAVHDFFKFRVDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDD 154
++ H K + ++ R +++++ DLVYA+ D+ D L E +N D
Sbjct: 79 SIIPHHMEKQNGEWFLI----RGPTSQWSLGDLVYAIWLGDQ---DYLSECGFVFNPSRD 131
Query: 155 DYFNKKDWYDFVEN---PDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQD 211
++ + + F+ N P IL + V+ C + LTLDN D
Sbjct: 132 EFLDDANQRSFLANLLEPAILNF---------SHIYWQVKMCK------VPYKLTLDNVD 176
Query: 212 LNGNWYDFGDF 222
LNG YDFGD+
Sbjct: 177 LNGQLYDFGDY 187
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| sp | P19811 RPOA_EAV | POL polyprotein (ORF1A/1B) [Contains: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase; Protease (EC 3.4.21.-)] [POL] [Equine arteritis virus (EAV)] | 3175 AA align |
Score = 42.0 bits (97), Expect = 5e-04
Identities = 55/259 (21%), Positives = 101/259 (38%), Gaps = 56/259 (21%)
Query: 525 DALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVS--------ICSTMTNRQFHQKLL 576
D + + + ++ + T T K +K + R++ G + C + F +
Sbjct: 2037 DDMVSQSMKSNLQTATMATCKRQYCSKYKIRSILGTNNYIGLGLRACLSGVTAAFQK--- 2093
Query: 577 KSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETP--HLMGWDYPKCDRAMPNMLRIMA 634
A G+ + +G SKF + P + + D CDR+ P ++R A
Sbjct: 2094 ---AGKDGSPIYLGKSKF------------DPIPAPDKYCLETDLESCDRSTPALVRWFA 2138
Query: 635 SLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVF 694
+ N L+ + + + ++V+ G + K GG SSGD T+ +N+++
Sbjct: 2139 T-------NLIFELAGQPELVHSYVLNCCHDLVVAGSVAFTKRGGLSSGDPITSISNTIY 2191
Query: 695 NICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFS 754
++ + L +IA+KY+ D E D F K+
Sbjct: 2192 SLVLYTQHMLLCGLEGYFPEIAEKYL---------------DGSLELRDMF-----KYVR 2231
Query: 755 MMILSDDAVVCY-NSNYAA 772
+ I SDD V+ N +YAA
Sbjct: 2232 VYIYSDDVVLTTPNQHYAA 2250
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| sp | P18479 POLG_ZYMVC | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Zucchini yellow mosaic virus (strain California) (ZYMV)] | 3080 AA align |
Score = 41.2 bits (95), Expect = 9e-04
Identities = 56/265 (21%), Positives = 109/265 (41%), Gaps = 40/265 (15%)
Query: 454 DYYRYNLPT---MCDIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN 507
D+++YN P D + L V+ V + F+ + I + I N+L+ A
Sbjct: 2356 DFFKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDPEEIYNSLNMKAAIGAQ 2415
Query: 508 KWGKARLYYDSMSYEDQDAL-FAYTKR--NVIPTITQMNLKYAISAKNRAR--------- 555
GK + Y++ + D++ L F +R N + +LK + + R
Sbjct: 2416 YRGKKKEYFEGLDDFDRERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVRANKTRTFTA 2475
Query: 556 ----TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVET 611
T+ G +C N +F++K LK +G +KFYGGW +++++
Sbjct: 2476 APIDTLLGAKVCVDDFNNEFYRKNLK-------CPWTVGMTKFYGGWDKLMRSLPD---- 2524
Query: 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMC 669
GW Y D + ++ + + VL + + L N A+++ ++
Sbjct: 2525 ----GWLYCHADGSQFDSSLTPALLNAVLIIRSFYMEDWWVGQEMLENLYAEIVYTPILA 2580
Query: 670 -GGSLYVKPGGTSSGDATTAYANSV 693
G+++ K G +SG +T N++
Sbjct: 2581 PDGTIFKKFRGNNSGQPSTVVDNTL 2605
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| sp | P18478 POLG_WMV2U | Genome polyprotein [Contains: Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] (Fragment) [Watermelon mosaic virus II (isolate USA)] | 1016 AA align |
Score = 40.8 bits (94), Expect = 0.001
Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 46/268 (17%)
Query: 454 DYYRYNLPTMC---DIRQLLFVVE-VVDKYFDCYDGGCINANQV--IVNNLDKSAGFPFN 507
D+++YN P + D VE V+ D C+ I +L+ A
Sbjct: 290 DFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIYGSLNMKAAVGAQ 349
Query: 508 KWGKARLYYDSM-SYEDQDALFAYTKR--NVIPTITQMNLKYAISA-----KNRART--- 556
GK + Y+ M S++ + L+ +R N I +LK + N+ RT
Sbjct: 350 YKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEKVQANKTRTFTA 409
Query: 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVET 611
+ G +C N QF+ LK +G +KFYGGW +++++
Sbjct: 410 APLDTLLGAKVCVDDFNNQFYSFNLK-------CPWTVGMTKFYGGWDKLMRSLPD---- 458
Query: 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHNTCCNLSHRFY---RLANECAQVLSEM 666
GW Y D + ++ ++ + VL+ + CC + + L N A+++
Sbjct: 459 ----GWTYCHADGSQFDSSLTPLLLNAVLSIR---CCFMEDWWVGREMLENLYAEIVYTP 511
Query: 667 VMC-GGSLYVKPGGTSSGDATTAYANSV 693
++ G+++ K G +SG +T N++
Sbjct: 512 ILAPDGTIFKKFRGNNSGQPSTVVDNTL 539
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| sp | Q04561 RPOA_LELV | POL polyprotein (ORF1A/1B) [Contains: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase; Protease (EC 3.4.21.-)] [POL] [Lelystad virus (LV) (Porcine reproductive and respiratory syndrome virus)] | 3859 AA align |
Score = 39.3 bits (90), Expect = 0.003
Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 56/258 (21%)
Query: 517 DSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQ------ 570
D S + D + A + T+T LK +K + RT+ G + + +R
Sbjct: 2700 DVQSIPEIDEMCARAVKENWQTVTPCTLKKQYCSKPKTRTILGTNNFIALAHRSALSGVT 2759
Query: 571 --FHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPN 628
F +K KS + +G +KF K ++ V L D CDR+ P
Sbjct: 2760 QAFMKKAWKS-------PIALGKNKF--------KELHCTVAGRCLEA-DLASCDRSTPA 2803
Query: 629 MLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTA 688
++R + N L+ L + ++V + K GG SSGD T+
Sbjct: 2804 IVRWFVA-------NLLYELAGCEEYLPSYVLNCCHDLVATQDGAFTKRGGLSSGDPVTS 2856
Query: 689 YANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDHEFVDEFYAY 748
+N+V+++ V QH + L ++ +F++E +
Sbjct: 2857 VSNTVYSL-----------------------VIYAQHMVLSALKMGHEIGLKFLEEQLKF 2893
Query: 749 --LRKHFSMMILSDDAVV 764
L + M++ SDD V+
Sbjct: 2894 EDLLEIQPMLVYSDDLVL 2911
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| sp | Q89330 POLG_ZYMVR | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Zucchini yellow mosaic virus (strain Reunion Island) (ZYMV)] | 3083 AA align |
Score = 38.9 bits (89), Expect = 0.004
Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 40/265 (15%)
Query: 454 DYYRYNLPTMCDIRQLLFVVEVVDKY------FDCYDGGCINANQVIVNNLDKSAGFPFN 507
D+++YN P + + +E VD F+ + I + I ++L+ A
Sbjct: 2359 DFFKYNKPVIVNQLDHDKFLEAVDGVIRMMCDFEFNECRFITDPEEIYSSLNMKAAIGAQ 2418
Query: 508 KWGKARLYYDSMSYEDQDAL-FAYTKR--NVIPTITQMNLKYAISAKNRAR--------- 555
GK + Y++ + D + L F +R N + +LK + + +
Sbjct: 2419 YRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKGLWNGSLKAELRPLEKVQANKTRTFTA 2478
Query: 556 ----TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVET 611
T+ G +C N +F+ K LK +G SKFYGGW +++ +
Sbjct: 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMSKFYGGWDKLMRALPD---- 2527
Query: 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMC 669
GW Y D + ++ + + VL + + L N A+++ ++
Sbjct: 2528 ----GWLYCHADGSQFDSSLTPALLNAVLIIRSFYMEDWWVGQEMLENLYAEIVYTPILA 2583
Query: 670 -GGSLYVKPGGTSSGDATTAYANSV 693
G+++ K G +SG +T N++
Sbjct: 2584 PDGTIFKKFRGNNSGQPSTVVDNTL 2608
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| sp | O36979 POLG_ZYMVS | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Zucchini yellow mosaic virus (strain Singapore) (ZYMV)] | 3083 AA align |
Score = 36.6 bits (83), Expect = 0.022
Identities = 56/265 (21%), Positives = 108/265 (40%), Gaps = 40/265 (15%)
Query: 454 DYYRYNLPTMC---DIRQLLFVVEVVDKY---FDCYDGGCINANQVIVNNLDKSAGFPFN 507
D+++YN P + D + L V V + F+ + I + I ++L+ A
Sbjct: 2359 DFFKYNKPVVVNQLDHDKFLGAVNGVIRMMCDFEFNECRFITDPEEIYDSLNMKAAIGAQ 2418
Query: 508 KWGKARLYYDSMSYEDQDAL-FAYTKR--NVIPTITQMNLKYAISAKNRAR--------- 555
GK + Y++ + D++ L F +R N + +LK + + +
Sbjct: 2419 YRGKKKEYFEGLDNFDRERLLFQSCERLFNGHKGLWNGSLKAELRPLEKVQANKTRTFTA 2478
Query: 556 ----TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVET 611
T+ G +C N +F+ K LK +G +KFYGGW +++ E
Sbjct: 2479 APIDTLLGAKVCVDDFNNEFYSKNLK-------CPWTVGMTKFYGGWDKLMR------EL 2525
Query: 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMC 669
P GW Y D + ++ + + VL + + L N A+++ ++
Sbjct: 2526 PD--GWLYCHADGSQFDSSLTPALLNAVLIIRSFYMEDWWVGQEMLENLYAEIVYTPILA 2583
Query: 670 -GGSLYVKPGGTSSGDATTAYANSV 693
G+++ K G +SG +T N++
Sbjct: 2584 PDGTIFKKFRGNNSGQPSTVVDNTL 2608
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| sp | Q01500 POLG_PEMVC | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Pepper mottle virus (California isolate) (PeMV) (PepMoV C)] | 3068 AA align |
Score = 36.6 bits (83), Expect = 0.022
Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 36/204 (17%)
Query: 510 GKARLYYDSMSYED------QDALFAYTKRNVI---PTITQMNLKYAISAKNRART---- 556
GK + Y++ + ED Q L YT + + ++ K I A N+ RT
Sbjct: 2410 GKKKEYFEKFTTEDKAEILRQSCLRLYTGKLGVWEWALKAELRSKEKIEA-NKTRTFTAA 2468
Query: 557 ----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETP 612
+ G +C N QF+ K ++ +G +KFYGGW +L + +
Sbjct: 2469 PIDTLLGGKVCVDDLNNQFYSKNIE-------CCWTVGMTKFYGGWDKLLTALPA----- 2516
Query: 613 HLMGWDYPKCDRAM--PNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMC- 669
GW Y D + ++ + + VL ++ + + L N +++ +
Sbjct: 2517 ---GWIYCDADGSQFDSSLTPYLINAVLTIRYAFMEDWDIGYKMLQNLYTEIIYTPISTP 2573
Query: 670 GGSLYVKPGGTSSGDATTAYANSV 693
G++ K G +SG +T NS+
Sbjct: 2574 DGTIVKKFRGNNSGQPSTVVDNSL 2597
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| sp | Q01901 POLG_PRSVH | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Papaya ringspot virus (strain P / mutant HA)] | 3344 AA align |
Score = 35.0 bits (79), Expect = 0.063
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 37/173 (21%)
Query: 472 VVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT 531
V+E+++ + +C + I ++VI+ L+ A GK R Y++ + E + AL +
Sbjct: 2616 VIELLNDH-ECPELEYITDSEVIIQALNMDAAVGALYTGKKRKYFEGSTVEHRQALVRKS 2674
Query: 532 -------KRNVIPTITQMNLKYA---ISAKNRARTVA------GVSICSTMTNRQFHQKL 575
+ V + L+ A ++ K R+ T A G +C N F+ K
Sbjct: 2675 CERLYEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFYSKN 2734
Query: 576 LKSIAATRGATVVIGTSKFYGGWHNMLKT-----VYSDVE--------TPHLM 615
++ +G +KFY GW LK VY D + TP+L+
Sbjct: 2735 ME-------CPWTVGMTKFYKGWDEFLKKFPDGWVYCDADGSQFDSSLTPYLL 2780
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| sp | Q90069 POLG_SBMVG | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Soybean mosaic virus (strain G2) (SMV)] | 3066 AA align |
Score = 34.3 bits (77), Expect = 0.11
Identities = 61/289 (21%), Positives = 111/289 (38%), Gaps = 33/289 (11%)
Query: 411 KPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLL 470
+P NKD A +GFFK V L F Q A++ D ++ +
Sbjct: 2344 QPSRLNKD----AFKRGFFKYNKPVVLNEVDF-QSFERAVAGVKLMMMEF----DFKECV 2394
Query: 471 FVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYY---DSMSYEDQDAL 527
+V + D+ +D + Q D +G + + K RL Y + + Y ++
Sbjct: 2395 YVTDP-DEIYDSLNMKAAVGAQYKGKKQDYFSGM--DSFDKERLLYLSCERLFYGEKGVW 2451
Query: 528 FAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATV 587
K + P K T+ G +C N QF+ S+ T TV
Sbjct: 2452 NGSLKAELRPIEKVQANKTRTFTAAPIDTLLGAKVCVDDFNNQFY-----SLNLTCPWTV 2506
Query: 588 VIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAM--PNMLRIMASLVLARKHNTC 645
G +KFY GW +++++ GW Y D + ++ ++ + VL +
Sbjct: 2507 --GMTKFYRGWDKLMRSLPD--------GWVYCHADGSQFDSSLTPLLLNAVLDVRSFFM 2556
Query: 646 CNLSHRFYRLANECAQVLSEMVMC-GGSLYVKPGGTSSGDATTAYANSV 693
+ L N A+++ ++ G+++ K G +SG +T N++
Sbjct: 2557 EDWWVGREMLENLYAEIVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTL 2605
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| sp | P21231 POLG_SBMVN | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Soybean mosaic virus (strain N) (SMV)] | 3066 AA align |
Score = 32.7 bits (73), Expect = 0.31
Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 40/265 (15%)
Query: 454 DYYRYNLPTMCD------IRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFN 507
D+++YN P + + + + V+++ FD + + I ++L+ A
Sbjct: 2356 DFFKYNKPVVLNEVDFQSFERAVAGVKLMMMEFDFKECVYVTDPDEIYDSLNMKAAVGAQ 2415
Query: 508 KWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLKYAISAK-NRART--- 556
GK + Y+ M D++ L Y ++ V + L+ + N+ RT
Sbjct: 2416 YKGKKQDYFSGMDSFDKERLLYLSCERLFYGEKGVWNGSLKAELRPIEKVQANKTRTFTA 2475
Query: 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVET 611
+ G +C N QF+ S+ T TV G +KFY GW +++++
Sbjct: 2476 APIDTLLGAKVCVDDFNNQFY-----SLNLTCPWTV--GMTKFYRGWDKLMRSLPD---- 2524
Query: 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMC 669
GW Y D + ++ ++ + VL + + L N A+++ ++
Sbjct: 2525 ----GWVYCHADGSQFDSSLTPLLLNAVLDVRSFFMEDWWVGREMLENLYAEIVYTPILA 2580
Query: 670 -GGSLYVKPGGTSSGDATTAYANSV 693
G+++ K G +SG +T N++
Sbjct: 2581 PDGTIFKKFRGNNSGQPSTVVDNTL 2605
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| sp | P18247 POLG_PVYN | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Potato virus Y (strain N) (PVY)] | 3063 AA align |
Score = 32.3 bits (72), Expect = 0.41
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT-----VYSDVE 610
T+ G +C N QF+ K ++ +G +KFYGGW +L+ VY D +
Sbjct: 2473 TLLGGKVCVDDFNNQFYSKNIE-------CCWTVGMTKFYGGWDKLLRRLPENWVYCDAD 2525
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| sp | Q02963 POLG_PVYHU | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Potato virus Y (strain Hungarian) (PVY)] | 3061 AA align |
Score = 32.3 bits (72), Expect = 0.41
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT-----VYSDVE 610
T+ G +C N QF+ K ++ +G +KFYGGW +L+ VY D +
Sbjct: 2471 TLLGGKVCVDDFNNQFYSKNIE-------CCWTVGMTKFYGGWDRLLRRLPENWVYCDAD 2523
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| sp | P17699 RRPO_ROTPG | RNA-directed RNA polymerase subunit VP1 (EC 2.7.7.48) (Inner layer protein VP1) (Core protein VP1) [S1] [Porcine rotavirus (strain Gottfried)] | 1088 AA align |
Score = 32.0 bits (71), Expect = 0.54
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 675 VKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKY------VRNLQHRLY 728
++ G +SG+ T ANS+ N+ AL+ T ++IA+KY +R Y
Sbjct: 584 IQYGAVASGEKQTKAANSIANL---------ALIKTVLSRIANKYSFITKIIRVDGDDNY 634
Query: 729 ECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK-NFKAVLY 787
L N DV + V E +R +S M A+V A+ +A K F+A +
Sbjct: 635 AVLQFNTDVTKQMVQEVSNDVRYIYSRMNAKVKALVSTVGIEIAKRYIAGGKIFFRAGIN 694
Query: 788 YQNNVFMSEAKCWTE 802
NN ++ W +
Sbjct: 695 LLNNEKRGQSTQWDQ 709
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| sp | Q65399 POLG_BCMVN | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Bean common mosaic virus (strain NL-3 / Michigan) (BCMV)] | 3066 AA align |
Score = 32.0 bits (71), Expect = 0.54
Identities = 50/265 (18%), Positives = 105/265 (39%), Gaps = 40/265 (15%)
Query: 454 DYYRYNLPTMCD------IRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFN 507
D+++YN P M + + + V+++ F + + I ++L+ A
Sbjct: 2360 DFFKYNKPVMLNEVNFEAFEKAVEGVKIMMIEFGFNECVYVTDPDDIYDSLNMKAAVGAQ 2419
Query: 508 KWGKARLYYDSMSYEDQDALFA-------YTKRNVIPTITQMNLKYAISAK-NRART--- 556
GK + Y+ M D++ L Y ++ + + L+ + N+ RT
Sbjct: 2420 YKGKKQDYFQDMDSFDKERLLFLSCERLFYGQKGIWNGSLKAELRPLEKVQANKTRTFTA 2479
Query: 557 -----VAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVET 611
+ G +C N QF+ L +G +KFYGGW +++ +
Sbjct: 2480 APIDTLLGAKVCVDDFNNQFYSFNLI-------CPWTVGMTKFYGGWDKLMRALPD---- 2528
Query: 612 PHLMGWDYPKCDRAM--PNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQVLSEMVMC 669
GW Y D + ++ ++ + VL+ + + L N A+++ ++
Sbjct: 2529 ----GWVYCHADGSQFDSSLTPLLLNSVLSIRSFFMEDWWVGKEMLENLYAEIVYTPILT 2584
Query: 670 -GGSLYVKPGGTSSGDATTAYANSV 693
G+++ K G +SG +T N++
Sbjct: 2585 PDGTIFKKFRGNNSGQPSTVVDNTL 2609
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| sp | P17468 RRPO_ROTBR | RNA-directed RNA polymerase subunit VP1 (EC 2.7.7.48) (Inner layer protein VP1) (Core protein VP1) [S1] [Bovine rotavirus (strain RF)] | 1088 AA align |
Score = 31.2 bits (69), Expect = 0.92
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 675 VKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK--IADKYVRNLQHRLYECLY 732
++ G +SG+ T ANS+ N+ A + +LS NK A K +R Y L
Sbjct: 584 IQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIRVDGDDNYAVLQ 638
Query: 733 RNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK-NFKAVLYYQNN 791
N +V + V + +R+ ++ M A+V A+ +A K F+A + NN
Sbjct: 639 FNTEVTEQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKIFFRAGINLLNN 698
Query: 792 VFMSEAKCWTE 802
++ W +
Sbjct: 699 EKRGQSTQWDQ 709
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| sp | P21615 RRPO_ROTBU | RNA-directed RNA polymerase subunit VP1 (EC 2.7.7.48) (Inner layer protein VP1) (Core protein VP1) [S1] [Bovine rotavirus (strain UK)] | 1088 AA align |
Score = 30.8 bits (68), Expect = 1.2
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 675 VKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK--IADKYVRNLQHRLYECLY 732
++ G +SG+ T ANS+ N+ A + +LS NK A K +R Y L
Sbjct: 584 IQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKYSFATKIIRVDGDDNYAVLQ 638
Query: 733 RNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK-NFKAVLYYQNN 791
N +V + V + +R+ ++ M A+V A+ +A K F+A + NN
Sbjct: 639 FNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKIFFRAGINLLNN 698
Query: 792 VFMSEAKCWTE 802
++ W +
Sbjct: 699 EKRGQSTQWDQ 709
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| sp | P22678 RRPO_ROTS1 | RNA-directed RNA polymerase subunit VP1 (EC 2.7.7.48) (Inner layer protein VP1) (Core protein VP1) [S1] [Simian 11 rotavirus (strain SA11-Both)] | 1088 AA align |
Score = 30.4 bits (67), Expect = 1.6
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 675 VKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNK--IADKYVRNLQHRLYECLY 732
++ G +SG+ T ANS+ N+ A + +LS NK A K +R Y L
Sbjct: 584 IQYGAVASGEKQTKAANSIANL-----ALIKTVLSRISNKHSFATKIIRVDGDDNYAVLQ 638
Query: 733 RNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIK-NFKAVLYYQNN 791
N +V + + + +R+ ++ M A+V A+ +A K F+A + NN
Sbjct: 639 FNTEVTKQMIQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKIFFRAGINLLNN 698
Query: 792 VFMSEAKCWTE 802
++ W +
Sbjct: 699 EKRGQSTQWDQ 709
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| sp | P89876 POLG_LMVE | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Lettuce mosaic virus (strain E) (LMV)] | 3255 AA align |
Score = 30.4 bits (67), Expect = 1.6
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 486 GC--INANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFA------YT------ 531
GC + + I L+ A GK R Y++S E+++ + YT
Sbjct: 2565 GCEYVTDEEAIFQALNMKAAVGALYSGKKRDYFESYGPEEKENILRESCKRLYTGKFGVW 2624
Query: 532 ----KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATV 587
K + P M K + T+ +C N F+ K ++ A
Sbjct: 2625 NGSLKSELRPMEKVMANKTRVFTAAPLDTLLAGKVCVDDFNNYFYSKNIE-------APW 2677
Query: 588 VIGTSKFYGGWHNML 602
+G +KFYGGW+ +L
Sbjct: 2678 TVGMTKFYGGWNELL 2692
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| sp | P17766 POLG_PPVNA | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Plum pox potyvirus (isolate NAT) (PPV)] | 3125 AA align |
Score = 29.6 bits (65), Expect = 2.7
Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 54/275 (19%)
Query: 510 GKARLYYDSMSYEDQDALFAYTKRNVI---PTITQMNLKYAISAKNRAR----------- 555
GK R Y++++S +D+++ + + + + +LK + K +
Sbjct: 2426 GKKRDYFENVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRPKEKVEANKTRSFTAAP 2485
Query: 556 --TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPH 613
T+ G +C N QF+ L + +G +KF GGW +LK +
Sbjct: 2486 IDTLLGGKVCVDDFNNQFYSLNLHCPWS-------VGMTKFRGGWDKLLKALPE------ 2532
Query: 614 LMGWDYPKCDRAM------PNMLRIMASLVLARKHNTCCN---LSHRFYRLANECAQVLS 664
GW Y D + P ++ + ++ LA LS+ + + V +
Sbjct: 2533 --GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQMLSNLYTEI------VYT 2584
Query: 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724
+ G++ K G +SG +T N++ I + + D + +Y N
Sbjct: 2585 PIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGHHPDTHDCICRYFVNGD 2644
Query: 725 HRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILS 759
+ H + Y L++HFS + L+
Sbjct: 2645 DLVLAV--------HPAYESIYDELQEHFSQLGLN 2671
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| sp | P03303 POLG_HRV14 | Genome polyprotein [Contains: Coat proteins VP1 TO VP4; Core proteins P2A TO P2C, P3A; Genome-linked protein VPG; Picornain 3C (EC 3.4.22.28) (Protease 3C) (P3C); RNA-directed RNA polymerase P3D (EC 2.7.7.48)] [Human rhinovirus 14 (HRV-14)] | 2179 AA align |
Score = 29.6 bits (65), Expect = 2.7
Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 33/231 (14%)
Query: 497 NLDKSAGFPFNKWG-KARLYYDSMSYEDQDALFAYTKRNV-IPTITQMNLKYAISAKNR- 553
++ SAGFP+ G K R + + + + F K + +P +T + + K R
Sbjct: 1830 DITTSAGFPYVSLGIKKRDILNKETQDTEKMKFYLDKYGIDLPLVTYIKDELRSVDKVRL 1889
Query: 554 --ARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVET 611
+R + S+ ++ R L K+ G T G ++ +V +
Sbjct: 1890 GKSRLIEASSLNDSVNMRMKLGNLYKAFHQNPGVL----TGSAVGCDPDVFWSVIPCLMD 1945
Query: 612 PHLMGWDYPKCDRAMPNMLRIMASLVLARKH-------NTCCNLSHRFYRLANECAQVLS 664
HLM +DY D ++ + + VL + + CN H F
Sbjct: 1946 GHLMAFDYSNFDASLSPVWFVCLEKVLTKLGFAGSSLIQSICNTHHIFR----------- 1994
Query: 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKI 715
+YV GG SG + T+ NS+ N T ++A D +K+
Sbjct: 1995 ------DEIYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKL 2039
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| sp | P03132 VNCA_AAV2 | DNA replication protein (Noncapsid protein) [REP] [Adeno-associated virus 2 (AAV2)] | 536 AA align |
Score = 29.3 bits (64), Expect = 3.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 700 VTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDHEF-------VDEFYAYLRKH 752
VT+N N DGN ++ + LQ R+++ R +DH+F V +F+ + + H
Sbjct: 418 VTSNTNMCAVIDGNSTTFEHQQPLQDRMFK-FELTRRLDHDFGKVTKQEVKDFFRWAKDH 476
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| sp | P09814 POLG_TVMV | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Tobacco vein mottling virus (TVMV)] | 3023 AA align |
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602
T+ G +C N F+ K ++ + +G +KFYGGW+ +L
Sbjct: 2438 TLLGGKVCVDDFNNHFYSKHIQCPWS-------VGMTKFYGGWNELL 2477
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| sp | P89509 POLG_TUMVJ | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Turnip mosaic virus (strain Japanese) (TuMV)] | 3164 AA align |
Score = 28.9 bits (63), Expect = 4.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT-----VYSDVE 610
T+ G +C N QF+ L+ A +G +KFY GW +L++ VY D +
Sbjct: 2555 TLLGGKVCVDDFNNQFYDHNLR-------APWSVGMTKFYCGWDRLLESLPDGWVYCDAD 2607
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| sp | P04517 POLG_TEV | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Tobacco etch virus (TEV)] | 3054 AA align |
Score = 28.9 bits (63), Expect = 4.5
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 17/68 (25%)
Query: 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLM 615
T+ +C N QF+ +K A +G +KFY GW+ +++ + S
Sbjct: 2475 TLLAGKVCVDDFNNQFYDLNIK-------APWTVGMTKFYQGWNELMEALPS-------- 2519
Query: 616 GWDYPKCD 623
GW Y CD
Sbjct: 2520 GWVY--CD 2525
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| sp | Q84934 POLG_PPVSK | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Plum pox potyvirus (strain SK 68) (PPV)] | 3140 AA align |
Score = 28.9 bits (63), Expect = 4.5
Identities = 55/275 (20%), Positives = 102/275 (37%), Gaps = 54/275 (19%)
Query: 510 GKARLYYDSMSYED-QDALFAYTKRNVIPT--ITQMNLKYAISAKNRAR----------- 555
GK R Y+ + S +D +D + A KR + + +LK + K +
Sbjct: 2426 GKKRDYFKNASEQDKEDFIKASCKRLFMGKKGVWNGSLKAELRPKEKVEANKTRSFTAAP 2485
Query: 556 --TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPH 613
T+ G +C N QF+ L + +G +KF GGW +L+ +
Sbjct: 2486 IDTLLGGKVCVDDFNNQFYSLNLHCPWS-------VGMTKFRGGWDKLLRALPD------ 2532
Query: 614 LMGWDYPKCDRAM------PNMLRIMASLVLARKHNTCCN---LSHRFYRLANECAQVLS 664
GW Y D + P ++ + ++ LA LS+ + + V +
Sbjct: 2533 --GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQMLSNLYTEI------VYT 2584
Query: 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724
+ G++ K G +SG +T N++ I + + D ++ +Y N
Sbjct: 2585 PIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHECICRYFVNGD 2644
Query: 725 HRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILS 759
+ H + Y L++HFS + L+
Sbjct: 2645 DLVLAV--------HPAYESMYDELQEHFSQLGLN 2671
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| sp | P31999 POLG_LMV0 | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Lettuce mosaic virus (strain 0 / French isolate) (LMV)] | 3255 AA align |
Score = 28.9 bits (63), Expect = 4.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 602
T+ +C N F+ K ++ A +G +KFYGGW+ +L
Sbjct: 2653 TLLAGKVCVDDFNNYFYSKNIE-------APWTVGMTKFYGGWNELL 2692
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| sp | Q02597 POLG_TUMVQ | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Turnip mosaic virus (strain Quebec) (TuMV)] | 3163 AA align |
Score = 28.5 bits (62), Expect = 5.9
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 556 TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT-----VYSDVE 610
T+ G +C N QF+ L+ A +G +KFY GW +L++ VY D +
Sbjct: 2554 TLLGGKVCVDDFNNQFYDHNLR-------APWDVGMTKFYCGWDRLLESLPDGWVYCDAD 2606
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| sp | P17767 POLG_PPVRA | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Plum pox potyvirus (strain Rankovic) (PPV)] | 3140 AA align |
Score = 28.1 bits (61), Expect = 7.8
Identities = 51/275 (18%), Positives = 101/275 (36%), Gaps = 54/275 (19%)
Query: 510 GKARLYYDSMSYEDQDALFAYTKRNVI---PTITQMNLKYAISAKNRAR----------- 555
GK R Y+ ++S +D+++ + + + + +LK + K +
Sbjct: 2426 GKKRDYFKNVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRPKEKVEANKTRSFTAAP 2485
Query: 556 --TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPH 613
T+ G +C N QF+ L + +G +KF GGW +L+ +
Sbjct: 2486 IDTLLGGKVCVDDFNNQFYSLNLHCPWS-------VGMTKFRGGWDKLLRALPE------ 2532
Query: 614 LMGWDYPKCDRAM------PNMLRIMASLVLARKHNTCCN---LSHRFYRLANECAQVLS 664
GW Y D + P ++ + ++ LA LS+ + + V +
Sbjct: 2533 --GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQMLSNLYTEI------VYT 2584
Query: 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724
+ G++ K G +SG +T N++ I + + D + +Y N
Sbjct: 2585 PIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHDCICRYFVNGD 2644
Query: 725 HRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILS 759
+ H + Y L++HFS + L+
Sbjct: 2645 DLVLAV--------HPAYESIYDELQEHFSQLGLN 2671
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| sp | P13529 POLG_PPVD | Genome polyprotein [Contains: N-terminal protein (P1); Helper component proteinase (EC 3.4.22.45) (HC-Pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B (NI-B) (NIB) (RNA-directed RNA polymerase) (EC 2.7.7.48); Coat protein (CP)] [Plum pox potyvirus (strain D) (PPV)] | 3141 AA align |
Score = 28.1 bits (61), Expect = 7.8
Identities = 51/275 (18%), Positives = 101/275 (36%), Gaps = 54/275 (19%)
Query: 510 GKARLYYDSMSYEDQDALFAYTKRNVI---PTITQMNLKYAISAKNRAR----------- 555
GK R Y+ ++S +D+++ + + + + +LK + K +
Sbjct: 2427 GKKRDYFKNVSDQDKESFVRASCKRLFMGKKGVWNGSLKAELRPKEKVEANKTRSFTAAP 2486
Query: 556 --TVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPH 613
T+ G +C N QF+ L + +G +KF GGW +L+ +
Sbjct: 2487 IDTLLGGKVCVDDFNNQFYSLNLHCPWS-------VGMTKFRGGWDKLLRALPE------ 2533
Query: 614 LMGWDYPKCDRAM------PNMLRIMASLVLARKHNTCCN---LSHRFYRLANECAQVLS 664
GW Y D + P ++ + ++ LA LS+ + + V +
Sbjct: 2534 --GWIYCDADGSQFDSSLSPYLINAVLNIRLAFMEEWDIGEQMLSNLYTEI------VYT 2585
Query: 665 EMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQ 724
+ G++ K G +SG +T N++ I + + D + +Y N
Sbjct: 2586 PIATPDGTIVKKFKGNNSGQPSTVVDNTLMVILAMTYSLLKLGYHPDTHDCICRYFVNGD 2645
Query: 725 HRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILS 759
+ H + Y L++HFS + L+
Sbjct: 2646 DLVLAV--------HPAYESIYDELQEHFSQLGLN 2672
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Database: XXswissprot Viruses
Posted date: Apr 29, 2003 11:07 AM
Number of letters in database: 3,552,911
Number of sequences in database: 8482
Lambda K H
0.324 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,018,226
Number of Sequences: 8482
Number of extensions: 317313
Number of successful extensions: 1087
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 57
length of query: 932
length of database: 3,552,911
effective HSP length: 101
effective length of query: 831
effective length of database: 2,696,229
effective search space: 2240566299
effective search space used: 2240566299
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)