============================================================================
Welcome to the SIB BLAST Network Service
If results of this search are reported or published, please mention that
the computation was performed at the SIB using the BLAST network service.
The SIB BLAST network service uses a server developed at SIB and the NCBI
BLAST 2 software. It is implemented on hardware provided by HP.
In case of problems, please contact us.
NCBI BLAST program reference [PMID:9254694]:
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W.,
Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein
database search programs. Nucleic Acids Res. 25:3389-3402(1997).
============================================================================
Query length: 639 AA
Date run: 2003-05-01 16:08:02 UTC+0100 on sib-blast.unil.ch
Program: NCBI BLASTP 2.2.5 [Nov-16-2002]
Database: XXswissprot Viruses
8482 sequences; 3,552,911 total letters
Swiss-Prot Release 41.6 of 30-Apr-2003
List of potentially matching sequences
Alignments
| sp | P59641
R1AB_CVHSA | Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes: Replicase
polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader
protein; p65 homolog; Papain-like proteinase (EC
3.4.24.-) (NSP1); 3C-like proteinase (EC 3.4.24.-)
(3CL-PRO) (NSP2); HD2 (NSP3); NSP4; NSP5; NSP6; Growth
factor-like (NSP7); RNA-directed RNA polymerase (EC
2.7.7.48) (RdRp) (NSP9); Helicase (Hel) (NSP10); NSP11;
NSP12; NSP13] [Human coronavirus (strain SARS)
(HCoV-SARS)] | 7073 AA
align |
Score = 1302 bits (3369), Expect = 0.0
Identities = 639/639 (100%), Positives = 639/639 (100%)
Query: 1 GAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIA 60
GAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIA
Sbjct: 180 GAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIA 239
Query: 61 WFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGR 120
WFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGR
Sbjct: 240 WFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGR 299
Query: 121 IRSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGY 180
IRSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGY
Sbjct: 300 IRSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGY 359
Query: 181 LPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNK 240
LPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNK
Sbjct: 360 LPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNK 419
Query: 241 RAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILAS 300
RAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILAS
Sbjct: 420 RAYWVPRASADIGSGHTGITGDNVETLNEDLLEILSRERVNINIVGDFHLNEEVAIILAS 479
Query: 301 FSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQ 360
FSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQ
Sbjct: 480 FSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQ 539
Query: 361 AAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMA 420
AAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMA
Sbjct: 540 AAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMA 599
Query: 421 YVTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDI 480
YVTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDI
Sbjct: 600 YVTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDI 659
Query: 481 VKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQ 540
VKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQ
Sbjct: 660 VKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQ 719
Query: 541 CIRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIV 600
CIRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIV
Sbjct: 720 CIRGKEQLQLLMPLKAPKEVTFLEGDSHDTVLTSEEVVLKNGELEALETPVDSFTNGAIV 779
Query: 601 GTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGG 639
GTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGG
Sbjct: 780 GTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGG 818
|
|
|
| sp | P29045
RRPO_BYDVR | Putative RNA-directed RNA polymerase (EC 2.7.7.48) [Contains: 39
kDa protein] [Barley yellow dwarf virus (isolate P-PAV)
(BYDV)] | 867 AA
align |
Score = 32.7 bits (73), Expect = 0.21
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 22 IKDFLARAGKSMCTLSEQLDYIESKRGVYC---CRDHEHEIAWFTERSDKSYEHQTPFEI 78
+K +A+ K+ T + + +S+ GVY C E+ +E+ +K E Q FE+
Sbjct: 85 LKLLVAQKSKTGVTEAWTDFFTKSRGGVYAPLSCEPTRQELEAKSEKLEKLLEEQHQFEV 144
Query: 79 KSAKKFDTFKG 89
++AKK+ KG
Sbjct: 145 RAAKKYIKEKG 155
|
|
|
| sp | P09505
RRPO_BYDVP | Putative RNA-directed RNA polymerase (EC 2.7.7.48) [Contains: 39
kDa protein] [Barley yellow dwarf virus (isolate PAV)
(BYDV)] | 867 AA
align |
Score = 32.7 bits (73), Expect = 0.21
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 22 IKDFLARAGKSMCTLSEQLDYIESKRGVYC---CRDHEHEIAWFTERSDKSYEHQTPFEI 78
+K +A+ KS T + + +S+ GVY C E+ +E+ ++ E Q FE+
Sbjct: 85 LKLLVAQKSKSGVTEAWTDFFTKSRGGVYAPLSCEPTRQELEVKSEKLERLLEEQHQFEV 144
Query: 79 KSAKKFDTFKG 89
++AKK+ KG
Sbjct: 145 RAAKKYIKEKG 155
|
|
|
| sp | P29044
RRPO_BYDV1 | Putative RNA-directed RNA polymerase (EC 2.7.7.48) [Contains: 39
kDa protein] [Barley yellow dwarf virus (isolate
MAV-PS1) (BYDV)] | 867 AA
align |
Score = 31.6 bits (70), Expect = 0.46
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 22 IKDFLARAGKSMCTLSEQLDYIESKRGVYC---CRDHEHEIAWFTERSDKSYEHQTPFEI 78
+K +A+ K+ T + + +S+ GVY C ++ +E+ +K E Q FE+
Sbjct: 85 LKLLVAQKSKTGVTEAWTDFFTKSRGGVYAPLSCEPTRQDLEVKSEKLEKLLEEQHQFEV 144
Query: 79 KSAKKFDTFKG 89
++AKK+ KG
Sbjct: 145 RAAKKYIKEKG 155
|
|
|
| sp | O64220
VG26_BPMD2 | Minor tail protein GP26 [26] [Mycobacteriophage D29] | 836 AA
align |
Score = 29.6 bits (65), Expect = 1.8
Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 29/154 (18%)
Query: 359 SQAAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVII 418
SQ G I ++F R +++ ++ L T+++GI + + L+ A+ S LL
Sbjct: 313 SQTLGSILNLFNRLMESGLQAMGQLGGPLSTLVNGIGDLFIALMPALTSVSSLL------ 366
Query: 419 MAYVTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVF 478
N+LGT +L PI L+ L D L ++TG
Sbjct: 367 ----------------GNVLGTLGTQLAPII----TALTPAFTTLADT---LGTMLTGAL 403
Query: 479 DIVKGQIQVASDNIKDCVKCFIDVVNKALEMCID 512
+ + V ++ + + + + L +D
Sbjct: 404 QALGPVLTVVAETLGTALTTALQAIQPMLPTLVD 437
|
|
|
| sp | P31332
RRPL_SYNV | RNA polymerase beta subunit (EC 2.7.7.48) (Large structural
protein) (L protein) [L] [Sonchus yellow net virus
(SYNV)] | 2116 AA
align |
Score = 29.3 bits (64), Expect = 2.3
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 35 TLSEQLDYIESKRGVYCCRDHEHEIAWFTERSDKSYEHQTPFEIKSAKKFDTFKGECPK 93
T SE ++ + +K V+ + W E+SDK Y + K + D G PK
Sbjct: 509 TRSELIESVNTKNSVFDSTKRRGILKWLNEQSDKIYNFLMRIDDKGLDEDDCIIGLYPK 567
|
|
|
| sp | P07540
LYCV_BPPZA | Lysozyme (EC 3.2.1.17) (Lysis protein) (Muramidase) (Endolysin)
(Late protein gp15) [15] [Bacteriophage PZA] | 258 AA
align |
Score = 28.9 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 488 ASDNIKDCVKCFIDVVNKALEMCIDQ 513
A D ++D V+ F+D VNKAL++ + Q
Sbjct: 53 AEDMLRDDVQAFVDGVNKALKVSVTQ 78
|
|
|
| sp | P11187
LYCV_BPPH2 | Lysozyme (EC 3.2.1.17) (Lysis protein) (Muramidase) (Endolysin)
(Morphogenesis protein 2) [15] [Bacteriophage phi-29] | 258 AA
align |
Score = 28.9 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 488 ASDNIKDCVKCFIDVVNKALEMCIDQ 513
A D ++D V+ F+D VNKAL++ + Q
Sbjct: 53 AEDMLRDDVQAFVDGVNKALKVSVTQ 78
|
|
|
| sp | P27410
POLN_RHDV | Non-structural polyprotein [Contains: RNA-directed RNA polymerase
(EC 2.7.7.48); Thiol protease P3C (EC 3.4.22.-);
Helicase (2C like protein); Coat protein] [Rabbit
hemorrhagic disease virus (RHDV)] | 2344 AA
align |
Score = 27.7 bits (60), Expect = 6.7
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 415 SVIIMAYVTGGLVQQTSQWLSNLLG--TTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKF 472
+V++ + L+ W ++L G TT+ +L ++ ++A ++ +E +K W+ +
Sbjct: 291 TVMLSTFKPVNLLAILMDWNNDLTGFITTLVRLLELYGVVQATVNLIIEGVKSFWDKVVC 350
Query: 473 LITGVFDIVKGQIQVASDNI 492
FD++K D++
Sbjct: 351 ATDRCFDLLKRLFDTFEDSV 370
|
|
|
| sp | Q07847
VE1_HPV63 | Replication protein E1 [E1] [Human papillomavirus type 63] | 618 AA
align |
Score = 27.3 bits (59), Expect = 8.7
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 548 LQLLMPLKAPKEVTFLEGDSHDTV--LTSEEVVLKNGELEALETPVDSFTNGAIVGTPVC 605
+ LL LK K ++++ S + L S ++ L + + +D F A+ G P+C
Sbjct: 457 MSLLRVLKG-KVISYVNSKSQFWLQPLASTKIALLDDATKPAWDYIDLFLRNALDGNPIC 515
Query: 606 VNGLMLLEIKDKEQYCALSPGLLATNNV 633
V ++K K P L+ T+N+
Sbjct: 516 V------DLKHKAPQQIKCPPLMITSNI 537
|
|
|
| sp | P13888
POLN_RRVT | Nonstructural polyprotein [Contains: Nonstructural protein NSP3;
Nonstructural protein NSP4] (Fragment) [Ross river virus
(strain T48) (RRV)] | 1148 AA
align |
Score = 27.3 bits (59), Expect = 8.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 487 VASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLR 522
VAS I D ++D+V+ + E C+D+ T AKLR
Sbjct: 673 VASYQITDEYDAYLDMVDGS-ESCLDRATFCPAKLR 707
|
|
|
| sp | P13887
POLN_RRVN | Nonstructural polyprotein [Contains: Nonstructural protein NSP1;
Nonstructural protein NSP2; Nonstructural protein NSP3;
Nonstructural protein NSP4] [Ross river virus (strain
NB5092) (RRV)] | 2479 AA
align |
Score = 27.3 bits (59), Expect = 8.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 487 VASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLR 522
VAS I D ++D+V+ + E C+D+ T AKLR
Sbjct: 2004 VASYQITDEYDAYLDMVDGS-ESCLDRATFCPAKLR 2038
|
|
|
Database: XXswissprot Viruses
Posted date: Apr 29, 2003 11:07 AM
Number of letters in database: 3,552,911
Number of sequences in database: 8482
Lambda K H
0.320 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,535,917
Number of Sequences: 8482
Number of extensions: 193972
Number of successful extensions: 548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 17
length of query: 639
length of database: 3,552,911
effective HSP length: 98
effective length of query: 541
effective length of database: 2,721,675
effective search space: 1472426175
effective search space used: 1472426175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)