| AA : | amino acid sequence |
| PROF_sec: | PROF predicted secondary structure: H=helix, E=extended (sheet),
blank=other (loop) PROF = PROF: Profile network prediction HeiDelberg |
| Rel_sec: | reliability index for PROFsec prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*' |
| SUB_sec: | subset of the PROFsec prediction, for all residues with an expected
average accuracy > 82% (tables in header) NOTE: for this subset the following symbols are used: L: is loop (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 5 |
| pH_sec: | 'probability' for assigning helix (1=high, 0=low) |
| pE_sec: | 'probability' for assigning strand (1=high, 0=low) |
| pL_sec: | 'probability' for assigning neither helix, nor strand (1=high, 0=low) |
| P_2_acc: | PROF predicted relative solvent accessibility (acc) in 2 states: b = 0-16%, e = 16-100%. |
| P_3_acc: | PROF predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%. |
| PROF_acc: | PROF predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1) % (e.g. for n=5: 16-25%). |
| Rel_acc: | reliability index for PROFacc prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*' |
| SUB_acc: | subset of the PROFacc prediction, for all residues with an expected
average correlation > 0.69 (tables in header) NOTE: for this subset the following symbols are used: I: is intermediate (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 4 |
| ali_orig: | input file |
| prof_fpar: | name of parameter file, used [w] |
| prof_nnet: | number of networks used for prediction [d] |
| prof_skip: | note: sequence stretches with less than 9 are not predicted, the symbol '*' is used! |
PROF results (normal)....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10.1.,....11.1.,....12.1.,....13.1.,....14.1.,....15.1.,....16.1.,....17.1.,....18.1.,....19.1.,....20.1.,....21.1.,....22.1.,....23.1.,....24.1.,....25.1.,....26.1.,....27.1.,....28.1.,....29.1.,....30.1.,....31.1.,....32.1.,....33.1.,....34.1.,....35.1.,....36.1.,....37.1.,....38.1.,....39.1.,....40.1.,....41.1.,....42.1.,....43.1.,....44.1.,....45.1.,....46.1.,....47.1.,....48.1.,....49.1.,....50.1.,....51.1.,....52.1.,....53.1.,....54.1.,....55.1.,....56.1.,....57.1.,....58.1.,....59.1.,....60.1.,....61.1.,....62.1.,....63.1.,....64.1.,....65.1.,....66.1.,....67.1.,....68.1.,....69.1.,....70.1.,....71.1.,....72.1.,....73.1.,....74.1.,....75.1.,....76.1.,....77.1.,....78.1.,....79.1.,....80.1.,....81.1.,....82.1.,....83.1.,....84.1.,....85.1.,....86.1.,....87.1.,....88.1.,....89.1.,....90.1.,....91.1.,....92.1.,....93.1.,....94.1.,....95.1.,....96.1.,....97.1.,....98.1.,....99.1.,....100.1,....101.1,....102.1,....103.1,....104.1,....105.1,....106.1,....107.1,....108.1,....109.1,....110.1,....111.1,....112.1,....113.1,....114.1,....115.1,....116.1,....117.1,....118.1,....119.1,....120.1,....121.1,....122.1,....123.1,....124.1,....125.1, AA MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT PROF_sec EEEEEEEEEE EEEEEEE EE EEEEEEEEEEEEE EEEE EEEEEEEEE EEEEE EE EEEE EEEEEEEEEEE EEEEEE EEEEEEEEEE EEEEE EEEEEEE EE EEEEEEEEEEEEEE EEEEE EEEEEEEE EEEE EEEEEEEEEEEEEEEEEEEEE EEEEEEE EEEEEEEE EEEEEEEE EEEEEEEEEE EEEE EEEEEEEEEEEEEE EEE EEEEEEEEEEE EEEEEEEEEEEEEEE EEEEEEEEEEEEEEEEEEE EEEEE EEE EEEEEEEEE EEEEEEEEEE EEEEEEEE EEEEEEEEEEEEEEEEEEEEEE EEEE EEEEEEEE EEEEE HHHHHHHHH EEEEEEE EEEEE EEEEEEEEEEEEEEEEEEE EEEEEE EEEEEE EEEEE EEEE EEEEEEEEE EEEEEEEEEE EEE EEE EEEEEEEEEEEEE EEEEE EEE HHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHH EEEE HHHHHHHHH EEE HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EE HHHHHHH EEEEEEEE EEEEEEEEEEEE EEEEEEE EEEEE EEE EEEEE EEEEEEEEEEEE HHHHHHHH EEEE HHHHHHHHHHHHHHHH HHHH EEEE HHHHHHHHHHHHHHHHHHHHHHHH HHHH E EEEEE Rel_sec 9578887431114443201012211022200011111135542225540411210111311233201311110000122233445236520100245423676200002321477762033047764343310131333111356630113553100000456632245775203110011121111320551677753021211034464521001467632323545554542110222212355420478751023123332300312666665136521135655543002343131002165321047886302243110000012444442110233443221011100222331001221111211044201245530367653002210145321011100121144443136676453112235543321013544234201002443232024431121100044423444022121221000357777652101112223565542244110243212300011136511430010343343111000131014565067773010133012311100010246776655555543200043001014664001102211100366510322211111111322112203565532000002677653310155022104603411221542212455443130356310021156466777787412046768888875410221235545643100224430011111022102588764010124543430522330353001233342440243332221216513202012232443667877653332234456554302652356677663200015577664788888886777765420033788888887655123788888888773011136666888885433544211022234221456778777655444324567888776342541033300000023133221210255542678765225531456543103330442012003777506426652121124402212764775100266775201342100345212377775420245666645010000331133041357668888886421100224420020023121456777788877666654432220232111002144442122013442220200267527 SUB_sec LEEEEEE................................EE....EE.....................................L..EE.......E...EEE..........EEEE......EEE.................LLL.....EE........EEE....EEEE..................LL.EEEEE...........L.L......EEE.....E.EEE.E............LL....EEEE................EEEEEE..LL....EEEEE...............EE.....EEEE.................................................................EE...EEEE.........L....................EEEE.E......LL........E...................................................EEEEEEE..........LLLL......................EE..........................LLL.EEEE.....................EEEEEEEEEEE..............EE..............EEE.......................EEEE........EEEEE.....LL......L........E......EE.......EE.......LL.HHHHHHHH.....HHHHHHHHHH........HH.HH.......................LLLLL.......H.....L......L........................LL..............HHHHHHHH........HHHH....LL..HHHHHHH......HHHHHH.HHHHHHHHHHHHHHH......HHHHHHHHHHHH...HHHHHHHHHHH......HHHHHHHHHH...H...............HHHHHHHHHHH......HHHHHHHHH...H........................LLL..EEEEEE..LL...EEE.................EEEE.L..EEE.............LL.EEE....EEEEE...........L....HHHHH.....LLLLL.L................HHHHHHHHHHH......................HHHHHHHHHHHHHHHH......................................EEE.L P_3_acc ebbbbbbbbbb bee e bbbb bb bbb bb bb b bbb e bbbbb bbbbbbb beb e ebeebbbb beee b bbbbbb b ebbbbbbb b bbbbbb b ebbbbbb e e e bbbbb bebbb b b b b e beb eb b beeb bbbbbbb bb bee ee eeb bb b b b b b bbb bbbbbbe e bbbbbbbbbe bbe eebbb bb b e bb b b e e eebbbbbb beb bb b e beb be ee b bbe e b bbbbbbbbbbe beb bbe ebbbbbbbb bbbe e e eee e bb be e bbbbbbbbbbb bb bbb beb e ee b b b e eb b b e eee e e b bbbbbb b e e ee e e bbbbbbbbbbbbbbbbbbbb eeee bb bbe b bb bbe be b bb bbbb b bbb bbb bbbbbbbbb beb bb eee b b b b bb b bbbb be eee e eb bbbbbbbbb b eebe bbbb be ee bb bbeeeb bbbbb b b bbbbb eb b bbbbbbbb ebbebb bbbbb b ebbe bbe bebb bbbbb b e eb b bbbb bee ee bbbbbbbb ebeb e bbebb bbbb b bbbbbbbbbbbbbbbbbb e bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb bb ebbe bbebbb bbb bbebbebbb bb bb bbbebbebb bbe b e bbbbbbbbb bbe beeb b bbbbbbbbbbbbbbbbbbb bbe b b bbbe bee b bb bbb bbbbbbbbbbbbbbbbbbb bbbbbbbbbbbeb b bbbbbbb eeebee bbbbbb b bbbbb bbbbbbbbbebbbbbbbbbbbbb bee bebb e e bee b ebbee e ee ebeebee ebbbbbb ebbe b ebbe bb bbb beeb eb bbb bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb e e be eeeeeebeee e e Rel_acc 127999895521021101001111120001000100011002031122222202011213241120000121110012110100022131000211002123121200101137463120023342132231030012031100301001432210020022032310303422201200001142431130320843102112100120320311220131223232322132200020100000012277996411020211222120043134241102013446423103021241111122102223133131101011011001001101010023230320011023133430112020221100001031333300121014202102000200101100012100100221917331210000100011111011113140031100102011100221100002022114111211111122