| AA : | amino acid sequence |
| OBS_sec: | observed secondary structure: H=helix, E=extended (sheet), blank=other (loop) |
| PROF_sec: | PROF predicted secondary structure: H=helix, E=extended (sheet),
blank=other (loop) PROF = PROF: Profile network prediction HeiDelberg |
| Rel_sec: | reliability index for PROFsec prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*' |
| SUB_sec: | subset of the PROFsec prediction, for all residues with an expected
average accuracy > 82% (tables in header) NOTE: for this subset the following symbols are used: L: is loop (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 5 |
| pH_sec: | 'probability' for assigning helix (1=high, 0=low) |
| pE_sec: | 'probability' for assigning strand (1=high, 0=low) |
| pL_sec: | 'probability' for assigning neither helix, nor strand (1=high, 0=low) |
| O_2_acc: | observerd relative solvent accessibility (acc) in 2 states: b = 0-16%, e = 16-100%. |
| P_2_acc: | PROF predicted relative solvent accessibility (acc) in 2 states: b = 0-16%, e = 16-100%. |
| O_3_acc: | observerd relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%. |
| P_3_acc: | PROF predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%. |
| OBS_acc: | observed relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1) % (e.g. for n=5: 16-25%). |
| PROF_acc: | PROF predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1) % (e.g. for n=5: 16-25%). |
| Rel_acc: | reliability index for PROFacc prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*' |
| SUB_acc: | subset of the PROFacc prediction, for all residues with an expected
average correlation > 0.69 (tables in header) NOTE: for this subset the following symbols are used: I: is intermediate (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 4 |
| ali_orig: | input file |
| prof_fpar: | name of parameter file, used [w] |
| prof_nnet: | number of networks used for prediction [d] |
| prof_skip: | note: sequence stretches with less than 9 are not predicted, the symbol '*' is used! |
PROF results (normal)....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10.1.,....11.1.,....12.1.,....13.1.,....14.1.,....15.1.,....16.1.,....17.1.,....18.1.,....19.1.,....20.1.,....21.1.,....22.1.,....23.1.,....24.1.,....25.1.,....26.1.,....27.1.,....28.1.,....29.1.,....30.1.,. AA SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ OBS_sec PROF_sec EEE EEEEEEEEEE EEEE EEEE EEEEE HHHHHEE EEEEEE EEEEEEEEEE EEEEEEEEE EEEEEEE EEEEEEE EEEEEEE EEEEEEEE EEEEE EEEEEEEEEEE EE EEEE EE EEE EEEHHHHHHHHHHHH EEEEEEE HHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHH EEEEE HHHHHHHHH Rel_sec 973121036675223588876244210112416624402214630342237661332011002533776300588886311112168888863266443023577604640578887515543267776403532654444122343115650654778876532315662100143213411111144112205541131236787888764476134430001245676877644864256332336778764325238878887888874257530353011002233726665333032138 SUB_sec LL......LLLL...EEEEEE...........LL........E.......LLL..........L..EEE...EEEEEE.......EEEEEEE..LL......EEEE..L..EEEEEEE.LL...EEEEE...L..EE............EEE.LL.EEEEEEE....LLL........................LL.......HHHHHHHHH..LL...........HHHHHHHH..LL..LL.....HHHHHH...L..HHHHHHHHHHHH..LLL...E..........L.HHHH........L O_3_acc bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb P_3_acc ee eeb e eeeb bbbbbbb ee bbbbbbeb b bbbbbbbbbee e eebee bb eb bbb e b bbbbbb be bbb b b e ee e eb ebeeeeeb bbbbb b e bbbbbbb be bb bbbbbbbbbbbbb beee b bbbbbbbbb ebbbbb ebeb b b b eeebe eeee bb bbbbbbbbbbb eeebbbe e beebbe bee e ee eee b bbb bbbe e eb ebbebbeebbeeebeb bbb beee e eebbe bee e e Rel_acc 622530012406333239093020022258241035073018673122130220310223211233043113149095413021309685542201711333043142123439899010102353383500211526543231133243223113719747428041101002101522202101123202112241203138899969993102141221122312361529243333211141024723671200238239053955505003413042212122132411341310133427 SUB_acc e..e.....e.e.....b.b........bb.b...b.b...bbb.......................b.....ib.bbb.......bibibi....e......i..e....b.bbbb.......b..b.b.....b.bbb........b.......b.bbbbb.b.b..........e..................e......bbbbbbbbb.....b...........b.e.b.e........e...bb..bb......b..b.e.beeb.e...e...b..........e...b.......e.e
PROF results (detail) ....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10.1.,....11.1.,....12.1.,....13.1.,....14.1.,....15.1.,....16.1.,....17.1.,....18.1.,....19.1.,....20.1.,....21.1.,....22.1.,....23.1.,....24.1.,....25.1.,....26.1.,....27.1.,....28.1.,....29.1.,....30.1.,. AA SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ pH_sec .. ... .... 1.0 pH_sec ....... .. ... ...... ............ 0.9 pH_sec ......... ........ ...... ............ ... 0.8 pH_sec . .......... .......... .......... .............. ..... 0.7 pH_sec .... ........... .......... ........... .............. ........ 0.6 pH_sec ..... ............ .......... ........... .............. ......... 0.5 pH_sec ......... ............ .......... ............. ................ ......... 0.4 pH_sec .... . . ... .......... ... . .... ................. . ............. . ............................... ..... .......... 0.3 pH_sec ... ... ......... .. . .... ....... ............. ...... . . .. ............ . ... . . ..... . .................................. .................. ......................................... ........ ............. 0.2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ pE_sec . ... .... ... .. 1.0 pE_sec ..... .. .... ...... .. ..... ... ..... 0.9 pE_sec ...... . ... ...... ....... .... ....... ..... .. .. ...... . 0.8 pE_sec ....... .. ... ..... ...... ........ ...... ....... ....... ...... ... ........ . . ... .. 0.7 pE_sec ... .......... . ... ... ..... ....... ......... ...... ....... ....... ....... .... ........... . .... . .. . .... ... 0.6 pE_sec .... .......... .... .... ..... .. ................. ......... ........ ........ ........ ........ ..... ........... ... .... .. ... ... ....... ..... . 0.5 pE_sec ..... .......... ....... .... ...... ...... .............................. ......... ......... ........ .......... ...... ............ ..... .......... ..... ... ......... .......... .. 0.4 pE_sec ...... ..................... ............ ... ...... .............................. ............ .......... ........... .................... ............ ........................ ..... .......... ........... .. ..... 0.3 pE_sec ........ ....................................... ................................................................................................................. ................................... .. ............ .... ................. ......... 0.2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ pL_sec . . 1.0 pL_sec .. . . . . . 0.9 pL_sec .. .... .. ... .. . .. .. ... .. ... . . ... . . 0.8 pL_sec .. ..... .. .. . ... .. ..... ... .... ... . .. ... . . ... ... .... .... .. ... . . 0.7 pL_sec ... ...... ... .. . ........ ... . ...... ... ..... ... ..... .. ..... ... .. .. ... ... ......... ... ..... .... .. .. 0.6 pL_sec ... ...... .... . .. ... ......... ... .. .. ....... ..... ..... .... ...... ... ..... ..... .. .... ..... .... .. ......... ... ...... ... ...... ..... 0.5 pL_sec .............. ........ .... .... ........... .... ... . ... .......... ..... ...... ..... ........ ... ............. ......... ...... . .... ..... .......... . ..... ....... ............ . ...... 0.4 pL_sec ............... ..................... ............. ...... .... ....... .......... ...... ...... ...... .............. ..... ........................................ ................ ............. ...... ..................... ......... 0.3 pL_sec ................ ..................................................... ......... ...................... .......................................... ............................................. .................... ................. . ........ . . ................................... 0.2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ OBS_acc 100% OBS_acc 81% OBS_acc 64% OBS_acc 49% OBS_acc 36% OBS_acc 25% OBS_acc 16% OBS_acc 9% OBS_acc 4% ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROF_acc . . . . . . . 100% PROF_acc .. .. . . .. .. . . . . .... .. . .. . . . 81% PROF_acc .. ... .. . .. . . .. . .... . . .. . . .. .... . . . .. .. . . ... . . . . 64% PROF_acc .. .. . ... .. . .. . .. .. . . . . .. . . . ..... . . ... . . . ... . .... ... . . .. . .. . .. ... . . . . . .. ... . ... . .. . .. . . 49% PROF_acc .. .. ..... .. .... . . ....... .. .... . ... . .. . ......... . . ..... . .. .. . .... .. . . . . ..... ...... . .... ...... .. . .. . .. ... . . . . . . .. ... . . ... ... .... . .. . . 36% PROF_acc .. .. ..... .. .... . . ....... .. .... . .... . . .. . . ......... . .. ..... . . ... .. . . .... .. .. . . . ..... ........ . .... ...... .. . .. . .. .... . . . . . .. . .. ... . .. ... ... .... .. .. ... 25% PROF_acc ..... ...... .. .... . . . ....... ... .... . .... . . .. . . ........... .. ..... . . ... . .. . . .... . .. .. . . . . ..... ........ . .... ...... .. .. ............ . . ..... .. . .. ... . .. ... ........ .. ...... 16% PROF_acc ..... ......... .... . . . ....... ... ...... .... . . .. . . ........... .. ..... . . ... . .. . . .... . .. .. . . . . ..... ........ . ..... ...... .. .. ............ . . ..... .. . .. ..... .. ... ........ .. ...... 9% PROF_acc ..... ......... .... . . . ....... ... ...... .... . . .. . . ........... .. ..... . . ... . .. . . .... . .. .... . . . .............. . ..... ...... .. .. ............ . . ..... .. . .. ..... .. ... ........ .. ...... 4% ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
--- --- GLOBE: prediction of protein globularity --- --- nexp = 147 (number of predicted exposed residues) --- nfit = 128 (number of expected exposed residues --- diff = 19.00 (difference nexp-nfit) --- =====> your protein appears as compact, as a globular domain --- --- --- GLOBE: further explanations preliminaryily in: --- http://www.columbia.edu/~rost/Papers/98globe.html --- --- END of GLOBE