RPS-BLAST 2.2.5 [Nov-16-2002]
Query= local sequence:
(422 letters)
Database: cdd.v1.62
11,088 PSSMs; 2,717,223 total columns
| PSSMs producing
significant alignments: |
Score
(bits) |
E
value |
| |
| gnl|CDD|6306 |
pfam00937, Corona_nucleoca, Coronavirus
nucleocapsid protein |
101 |
2e-22 |
| gnl|CDD|6306 |
pfam00937, Corona_nucleoca, Coronavirus
nucleocapsid protein |
66.9 |
4e-12 |
gnl|CDD|6306, pfam00937, Corona_nucleoca, Coronavirus
nucleocapsid protein. CD-Length = 373 residues, only 35.7% aligned
Score = 101 bits (252), Expect = 2e-22
Query: 40 QRRPQGLPNNTASWFTALTQ-HGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGG 98
Sbjct: 13 NQRGRKGNTIPLSWFSPITVKQGSKFWKVFPGNGVPINKGN-KDQQIGYWNRQIR-FRTR 70
Query: 99 DGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAT 158
Sbjct: 71 KGQRKELPPRWYFYYLGTGPHADAKFGDRIDGVVWVAADGADTKPTGLGVRR--DNFEPI 128
Query: 159 VLQLPQGTTLPKGFYAE 175
Sbjct: 129 PLRFSQGTNLPWGFIVE 145
gnl|CDD|6306, pfam00937, Corona_nucleoca, Coronavirus
nucleocapsid protein. CD-Length = 373 residues, only 27.3% aligned
Score = 66.9 bits (163), Expect = 4e-12
Query: 252 AAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPS 311
Sbjct: 219 AEKNLNKPRWKRTPGKG-DVTQCFGPRGKGQ---NFGDSEMVENGVKAKGYPQMAELVPS 274
Query: 312 ASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 361
Sbjct: 275 VSACLFGSGVTAKEQGDGYELTFTFKT----TLPKFDPYVKIFLEQVDAY 320
|
