| SNP Number |
Exon |
Position In Exon |
Confirmation |
Call Quality |
Heterozygosity Class |
Sample Detected |
Location In gene |
Amino Acid 1 |
Amino Acid 2 |
Type of Amino Acid Change |
Codon Position |
Codon 1 |
Codon 2 |
GenBank Accession # |
Allele 1 |
Allele 1 Frequency |
Allele 2 |
Allele 2 Frequency |
Flanking Sequence |
| CHAK00001 |
1 |
305 |
Not Confirmed |
Likely |
Rare |
African |
5' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29288 |
G |
0.95 |
A |
0.05 |
AGGGGCTGAGGGGCGGAGAGGCCTGGCGGGCGCTGCGGGCCAGGGGACGGGGGCGGAGCC*GAGCCGGAGCCGACGGGCGGTGGCCGCACTGGGACCCCGGAATCCCGCGCGCTGCCCACG |
| CHAK00002 |
10 |
246 |
Confirmed |
Certain |
Medium |
U.S. White |
Coding |
Gly |
Trp |
Nonsynonymous |
1 |
GGG |
TGG |
L29294 |
G |
0.85 |
T |
0.15 |
CAGCAGCGGGAGAAGACAAGATGGCTGAACTCTGGCCGGGGCGACGAAGCTTCCGAGGAA*GGCAGAATGGAAGCAGTCCCAAGTCGAAGACTAAGGTGTGGACGAACATTACACACGATC |
| CHAK00003 |
12 |
43 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Coding |
Asn |
Ile |
Nonsynonymous |
2 |
AAT |
ATT |
L29297 |
A |
0.95 |
T |
0.05 |
ATGGCTGCTCAGGACTGTTGATGTGTGCCTCTCCTTCCCACCCTCAGATCCGAGAGCAGA*TTTACAGGACATTAAGACGGCTGGCCCTCAGTCCCAGGTTTTGTGTGGTGTAGTGATGGA |
| CHAK00004 |
13 |
173 |
Confirmed |
Likely |
High |
Both |
Coding |
Ser |
Cys |
Nonsynonymous |
2 |
TCT |
TGT |
L29295 |
C |
0.6 |
G |
0.4 |
CACTCACAGACCGTGAGCTGGAGGAGTACCGCAGGGAGGTGGAGAGGAAGCAGAAGGGCT*TGAAGGTGAGTGCTTGTGGTCCTGGGCACGGCCACTCCAGAAGGTGAAAGTGCTCTGGGA |
| CHAK00005 |
15 |
74 |
Not Confirmed |
Certain |
Medium |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29296 |
C |
0.75 |
T |
0.25 |
CTNNNNNNACAAGCAGGAGACGGATGCGCTAGAGAGTACCTGTTACCCTAGTAAGTACCG*GCTGCCTCCGCTCTCCACCGGTGCCCTGCGCTTTGCCTCATTCTCCTGCTTCTTTGT |
| CHAK00006 |
16 |
691 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29296 |
C |
0.95 |
G |
0.05 |
GAGGCACTAAGTCATGGTCCTGGCTGGAAGGTACTGAAGGCTTCTGCAGCTTTGGCTGCA*GTCACCCTCCTGAGCCTCACCTTTCCTGCCGTCCCTCCTGTTGTGAAATCACCACATTCT |
| CHAK00007 |
16 |
995 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29296 |
C |
0.95 |
T |
0.05 |
AGGAAACCCCAGCGGCAGATGGGCCTGTGTGCACCCAACGTGATGCTATGCATGTCTGAC*GACGATCCCTCGACCAGAATCAGATTCAGGAGCTCAGTTTCTTTTTCACTTGGGTCTCTG |
| CHAK00008 |
16 |
1071 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29296 |
G |
0.95 |
A |
0.05 |
AGAATCAGATTCAGGAGCTCAGTTTCTTTTTCACTTGGGTCTCTGGATTCCTGTCATAGG*AAGGTATATCAGGAGGGGAAGAGGCCTTTCTAGAATTTTCTTTGAGCAGGTTTACAATTT |
| CHAK00009 |
16 |
1321 |
Not Confirmed |
Likely |
Rare |
U.S. White |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29296 |
C |
0.95 |
T |
0.05 |
GAAAGATGCCCTAGTTGTGATCAAAGGTAACTCGAGGTGGAGGGTAGCCCTGGGGCCCCT*GACATCACCGTCATTGATGGAGCCTGAACCGTGTGCTCCTCGGCAGATGCTGTTGTTGTT |
| CHAK00010 |
16 |
1328 |
Not Confirmed |
Likely |
Low |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29296 |
A |
0.9 |
G |
0.1 |
GCCCTAGTTGTGATCAAAGGTAACTCGAGGTGGAGGGTAGCCCTGGGGCCCCTCGACATC*CCGTCATTGATGGAGCCTGAACCGTGTGCTCCTCGGCAGATGCTGTTGTTGTTACTTCCC |
| CHAK00011 |
16 |
1478 |
Not Confirmed |
Likely |
Low |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29296 |
A |
0.9 |
G |
0.1 |
GCTGAGCAGGAACCGGAGGGTGACCCATTTCAGGAGGTGCCGGTACCAGCCTGACTAGGT*CAGGCAAGCTTGTGTGGGCCCAACAGGCCCTTGGTAGAGCTGGTGCCAGATGTGGGCTCA |
| CHAK00012 |
2 |
31 |
Not Confirmed |
Likely |
Rare |
African |
5' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
L29293 |
A |
0.95 |
G |
0.05 |
ATGAAACACTGTTAGACATTGATTTGAAAACAATAATTTCTTTTATTTTGATTCTGTAGG*ACCTAGAAAGATTGTACAATGAATGGTGATTCTCGTGCTGCGGTGGTGACCTCACCACCC |
| CHAK00013 |
7 |
96 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Coding |
Tyr |
Asn |
Nonsynonymous |
1 |
TAT |
AAT |
L29291 |
T |
0.95 |
A |
0.05 |
GCAATGAAATGTGGCCTCTTGCCAATCTCCCCGGAGGCGCTTTCCCTTGGAGAAGTGGCT*ATCATGACTACCATGGCATTCTGGTTGATGAAGAGGAAAAAGTTTTGATTCAGAAAAATC |
| CHAK00014 |
9 |
173 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Coding |
Glu |
Asp |
Nonsynonymous |
3 |
GAA |
GAT |
L29289 |
A |
0.95 |
T |
0.05 |
AGGGTCTCCGGTAGGGGAAGGCACTGGATCGCCTCCCAAGTGGCAGATTGGTGAGCAGGA*TTTGAAGCCCTCATGCGGATGCTCGATAATCTGGTAAGAATGGTGCCACCACTTGATGAT |
