| SNP Number |
Exon |
Position In Exon |
Confirmation |
Call Quality |
Heterozygosity Class |
Sample Detected |
Location In gene |
Amino Acid 1 |
Amino Acid 2 |
Type of Amino Acid Change |
Codon Position |
Codon 1 |
Codon 2 |
GenBank Accession # |
Allele 1 |
Allele 1 Frequency |
Allele 2 |
Allele 2 Frequency |
Flanking Sequence |
| CHAK00123 |
N/A |
101 |
Confirmed |
Certain |
Medium |
African |
Promoter |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
C |
0.75 |
T |
0.25 |
TCCTGCTGCCTGCCCCGGCACTCTGGCTCCCCAGCTCAAGGTTCAGGCCTTGCCCCAGGC*GGGCCTCTGGGTACCTGAGGTCTTCTCCCGCTCTGTGCCCTTCTCCTCACCTGGCTGCAA |
| CHAK00124 |
N/A |
334 |
Not Confirmed |
Likely |
High |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
T |
0.7 |
C |
0.3 |
TGGCCGTGCTCTTCCTGACGGGTAGGTGTCCCCTAACCTAGGAGCCAACCATCGGGGGGC*TTCTCCCTAAATCCCCGTGGCCCACCCTCCTGGGCAGAGGCAGCAGGTTTCTCACTGGCC |
| CHAK00125 |
N/A |
620 |
Not Confirmed |
Likely |
Medium |
U.S. White |
Coding |
Ala |
Ala |
Synonymous |
3 |
GCC |
GCT |
J00098 |
C |
0.85 |
T |
0.15 |
GTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAGTTTGAAGGCTCCGC*TTGGGAAAACAGCTAAAGTAAGGACCCAGCCTGGGGTTGAGGGCAGGGGCAGGGGGCAGA |
| CHAK00126 |
N/A |
771 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
C |
0.95 |
T |
0.05 |
GCCGAGTCCTCACCTAATATCTGATGAGCTGGGCCCCACAGATGGTCTGGATGGAGAAAC*GGAATGGATCTCCAGGCAGGGTCACAGCCCATGTCCCCTGCAAAGGACAGACCAGGGCTG |
| CHAK00127 |
N/A |
840 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
G |
0.95 |
A |
0.05 |
TCTCCAGGCAGGGTCACAGCCCATGTCCCCTGCAAAGGACAGACCAGGGCTGCCCGATGC*TGATCACAGAGCCACATTGTGCCTGCAAGTGTAGCAAGCCCCTTTCCCTTCTTCACCACC |
| CHAK00128 |
N/A |
1016 |
Not Confirmed |
Likely |
Medium |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
A |
0.75 |
C |
0.25 |
GGAGGCATAGAAGCGAGGTCCTTCAAGGGCCCACTTTGGAGACCAACGTAACTGGGCACC*GTCCCAGCTCTGTCTCCTTTTTAGCTCCTCTCTGTGCCTCGGTCCAGCTGCACAACGGGG |
| CHAK00129 |
N/A |
1162 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
G |
0.95 |
C |
0.05 |
GGTTGAGAGTGTACTGGAAATGCTAGGCCACTGCACCTCCGCGGACAGGTGTCACCCAGG*CTCACCCCTGATAGGCTGGGGCGCTGGGAGGCCAGCCCTCAACCCTTCTGTCTCACCCTC |
| CHAK00130 |
N/A |
1163 |
Not Confirmed |
Certain |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
C |
0.95 |
T |
0.05 |
GTTGAGAGTGTACTGGAAATGCTAGGCCACTGCACCTCCGCGGACAGGTGTCACCCAGGG*TCACCCCTGATAGGCTGGGGCGCTGGGAGGCCAGCCCTCAACCCTTCTGTCTCACCCTCC |
| CHAK00131 |
N/A |
1401 |
Not Confirmed |
Likely |
Rare |
African |
Coding |
Asp |
His |
Nonsynonymous |
1 |
GAC |
CAC |
J00098 |
G |
0.95 |
C |
0.05 |
CTGAGGCAAGAGATGAGCAAGGATCTGGAGGAGGTGAAGGCCAAGGTGCAGCCCTACCTG*ACGACTTCCAGAAGAAGTGGCAGGAGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGC |
| CHAK00132 |
N/A |
1576 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Coding |
Arg |
Pro |
Nonsynonymous |
2 |
CGC |
CCC |
J00098 |
G |
0.95 |
C |
0.05 |
AGCTGAGCCCACTGGGCGAGGAGATGCGCGACCGCGCGCGCGCCCATGTGGACGCGCTGC*CACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGC |
| CHAK00133 |
N/A |
1643 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Coding |
Lys |
Lys |
Synonymous |
3 |
AAG |
AAA |
J00098 |
G |
0.95 |
A |
0.05 |
TCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAA*GAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACG |
| CHAK00134 |
N/A |
1757 |
Not Confirmed |
Likely |
Low |
African |
Coding |
Pro |
Pro |
Synonymous |
3 |
CCC |
CCG |
J00098 |
C |
0.95 |
G |
0.05 |
GAGCACGCTCAGCGAGAAGGCCAAGCCCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCC*GTGCTGGAGAGCTTCAAGGTCAGCTTCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTC |
| CHAK00135 |
N/A |
2007 |
Not Confirmed |
Likely |
High |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
T |
0.65 |
A |
0.35 |
GGGGCCTTTGGCCCTGGAGCAGGGACTTCCTGCCGGATCTCAACAACTCCGTGCCCAGAC*GGACGTCTTAGGGCCAAGATCGACGTTGGAGGACCTGCTGGACGCNTGGCTGCTTACGAG |
