| SNP Number |
Exon |
Position In Exon |
Confirmation |
Call Quality |
Heterozygosity Class |
Sample Detected |
Location In gene |
Amino Acid 1 |
Amino Acid 2 |
Type of Amino Acid Change |
Codon Position |
Codon 1 |
Codon 2 |
GenBank Accession # |
Allele 1 |
Allele 1 Frequency |
Allele 2 |
Allele 2 Frequency |
Flanking Sequence |
| CHAK00183 |
N/A |
429 |
Not Confirmed |
Certain |
High |
Both |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
A |
0.3 |
C |
0.7 |
GGCATGAGGTGGGGTAGGAGAGCACTGAGAATACTGTCCCTTTTAAGCAACCTACAGGGG*AGCCCTGGAGATTGCAGGACCCAAGGAGCTGGCAGGATGGATAGGCAGGTGGACTTGGGG |
| CHAK00184 |
N/A |
460 |
Not Confirmed |
Likely |
Low |
Both |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
G |
0.95 |
C |
0.05 |
TACTGTCCCTTTTAAGCAACCTACAGGGGAAGCCCTGGAGATTGCAGGACCCAAGGAGCT*GCAGGATGGATAGGCAGGTGGACTTGGGGTATTGAGGTCTCAGGCAGCCACGGCTGAAGT |
| CHAK00185 |
N/A |
636 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
G |
0.95 |
A |
0.05 |
CTCCAGTAGTCTTTCAGGGAACTGAAGCCATCGGTCACCCAGCCCCTAAATCAGTCAGGG*AAGCAACAGAGCAGGGCATGAGAACTCCTCTGTAGGCAACCATGGGACCCACACCCATGT |
| CHAK00186 |
N/A |
954 |
Not Confirmed |
Certain |
High |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
A |
0.55 |
G |
0.45 |
TGACAGGGTGGGGAGATGTGAAAGGTCAAGGCTGTCATTGTTTTCTGTGCAAACAGCACC*CCTGGAGTTGCACAACCTGGTGGCTCTGAGCAGGGTAGGACAGAGGGAGGCAGCCTCTCA |
| CHAK00187 |
N/A |
1148 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
T |
0.95 |
A |
0.05 |
TTCTCATCTGCAAAGTGAGAAAATAACACCTACCCCAAAGCCGGTTCTGGGGACTAAGAA*GTTTATGAACACCTCTGCTATGCCAGCTAATGCCAGTCAGGGTGAGGTGGAGAAGGGAGT |
| CHAK00188 |
N/A |
1322 |
Not Confirmed |
Likely |
High |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
G |
0.7 |
A |
0.3 |
CTTCTGCTCACACTGGCCCCAGGTCTTAGAACAAAGCAGAAGCACTCACGGGCTTGAATT*GGTCAGGTGGGGCCTCCCAAGGCAAACCCCTAGCCCAGGGTCCCCAACCCCCAAGTCATA |
| CHAK00189 |
N/A |
1468 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
A |
0.95 |
C |
0.05 |
CCATGGACTGTTAGGAGCCGGGCTGCACAGCACGAAGTGAGTGGTGGGTGAGTGAGCAAT*CGCCTGAGCTCCGCCTCCTGTCAGATCAAGTGGCCTTACATTCTCATAGGAGTGTGAACC |
| CHAK00190 |
N/A |
1519 |
Not Confirmed |
Certain |
High |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
A |
0.55 |
G |
0.45 |
CCTGAGCTCCGCCTCCTGTCAGATCAAGTGGCCTTACATTCTCATAGGAGTGTGAACCCT*TTGTGAACTGCACATGCCAGGGATCTAGGTGGAGGGCTCCTTATGAGAATCTAATGCCTG |
| CHAK00191 |
N/A |
1637 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
T |
0.95 |
A |
0.05 |
CTGATGATCTGAGGTGGAACAGCTTCATCCCAAAACCATCCCCGCTGGCCCATGGAAAAA*TGTCCACCACAAAACTGGTCCCTGGTGCCAAAAAGGCTGAGGACCACTGCTCTAGCCAGA |
| CHAK00192 |
N/A |
1722 |
Not Confirmed |
Likely |
Medium |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
A |
0.85 |
G |
0.15 |
GTGCCAAAAAGGCTGAGGACCACTGCTCTAGCCAGACCTTCAGAAAAGGAAAATGGGGCC*GGCGCAGTGGCTCGTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGAGGATCCCC |
| CHAK00193 |
N/A |
1728 |
Not Confirmed |
Likely |
High |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
A |
0.7 |
G |
0.3 |
AAAAGGCTGAGGACCACTGCTCTAGCCAGACCTTCAGAAAAGGAAAATGGGGCCAGGCGC*GTGGCTCGTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGAGGATCCCCTGAGGT |
| CHAK00195 |
N/A |
1774 |
Not Confirmed |
Likely |
High |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
A |
0.65 |
C |
0.35 |
ATGGGGCCAGGCGCAGTGGCTCGTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGG*GGATCCCCTGAGGTCAGGAATTCAAGACCAACCTGGCCAACATGGTGAAACCCCATCTCT |
| CHAK00196 |
N/A |
1817 |
Not Confirmed |
Likely |
High |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
T |
0.7 |
C |
0.3 |
TGGGAGGCCGAGGCAGGAGGATCCCCTGAGGTCAGGAATTCAAGACCAACCTGGCCAACA*GGTGAAACCCCATCTCTGCTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCGTGCCTG |
| CHAK00197 |
N/A |
1931 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
C |
0.95 |
T |
0.05 |
GTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGGTTGAACCCGGGAGA*GGAGGTTGCAGTGAGCCGAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGGGAGAC |
| CHAK00198 |
N/A |
1975 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
G |
0.95 |
A |
0.05 |
GGTTGAACCCGGGAGACGGAGGTTGCAGTGAGCCGAGATGGCACCACTGCACTCCAGCCT*GGTGACAGAGGGAGACTCCATTAAAAAAAAAAGAAGAAGAAAGAAAGAGAGAAAGGAAGA |
| CHAK00199 |
N/A |
2221 |
Not Confirmed |
Certain |
Low |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
G |
0.95 |
A |
0.05 |
AAAAATAGAAAGAGAAAGAAAGGGAAAGGAAAGGAAAATGGAAATGAGGGCTAAAACGGC*CGGCCCTAGGACTGCTCCGGGAGAAAGGAGGGACCTGGGAGGAATGCAGTCTCAACTCTG |
| CHAK00200 |
N/A |
2535 |
Not Confirmed |
Certain |
Medium |
Both |
Coding |
Gly |
Gly |
Synonymous |
3 |
GGC |
GGT |
J00098 |
G |
0.75 |
A |
0.25 |
CTGGGACTCCTGCACGCTGCTCAGTGCATCCTTGGCGGTCTTGGTGGCGTGCTTCATGTA*CCCTGCATGAAGCTGAGAAGGGAGGCATCCTCGGCCTCTGAAGCTCCTGAGGAAAGAGCA |
| CHAK00201 |
N/A |
2854 |
Not Confirmed |
Certain |
High |
African |
Promoter |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
J00098 |
C |
0.7 |
T |
0.3 |
AGTGTCCTGTGAGGGGCACCCCAGGTCCCCATGCCTCTGGACCCCTCCCTGGGGAGGTGG*GTGGCCCCTAAGGTAGAACCTTAGCTGGGTCTGCCAGAAGGAGTAGGGGCCGGCTCCTGC |
