| SNP Number |
Exon |
Position In Exon |
Confirmation |
Call Quality |
Heterozygosity Class |
Sample Detected |
Location In gene |
Amino Acid 1 |
Amino Acid 2 |
Type of Amino Acid Change |
Codon Position |
Codon 1 |
Codon 2 |
GenBank Accession # |
Allele 1 |
Allele 1 Frequency |
Allele 2 |
Allele 2 Frequency |
Flanking Sequence |
| CHAK00450 |
1 |
325 |
Not Confirmed |
Likely |
Rare |
African |
Promoter |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
U90658 |
C |
0.95 |
G |
0.05 |
GGGCAGTGCGGGGAAGCGCCGCGGGAAGGAGCGGCTCCGAGCAACAGGTGCAGCACGCAG*CGCTCCGGGAGCCAGGGAAAACCGCCGGCGAAGATCTGGAGCGGTAAGGCGGAGAGAAGG |
| CHAK00451 |
1 |
327 |
Confirmed |
Certain |
Medium |
African |
Promoter |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
U90658 |
G |
0.85 |
C |
0.15 |
GCAGTGCGGGGAAGCGCCGCGGGAAGGAGCGGCTCCGAGCAACAGGTGCAGCACGCAGCC*CTCCGGGAGCCAGGGAAAACCGCCGGCGAAGATCTGGAGCGGTAAGGCGGAGAGAAGGGT |
| CHAK00452 |
1 |
553 |
Confirmed |
Certain |
High |
African |
Promoter |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
U90658 |
G |
0.5 |
C |
0.5 |
CCGTCCCTTCCCGAGAAGGTCCAGCTCCGGGCTCCCGAACCCACCCTCTCTCAGAAGGTC*CGGCGCAAAGACGGTGCCACCAGGCACGGCCACCGGATCCCCGCTCCCGCTGGCTCGCGC |
| CHAK00453 |
1 |
887 |
Not Confirmed |
Certain |
High |
African |
Coding |
Gly |
Gly |
Synonymous |
3 |
GGC |
GGT |
U90658 |
C |
0.5 |
T |
0.5 |
CGGCATCGGCGTGGAGAACTTCGTCACGCTGGTGGTGTTCGGCCTGATCTTCGCGCTGGG*GTGCTGGGCAACAGCCTAGTGATCACCGTGCTGGCGCGCAGCAAGCCGGGCAAGCCGCGG |
| CHAK00454 |
1 |
1052 |
Not Confirmed |
Likely |
Low |
African |
Coding |
Val |
Val |
Synonymous |
3 |
GTG |
GTT |
U90658 |
G |
0.9 |
T |
0.1 |
GGCCTACCTGCTCTTCTGCATCCCCTTCCAGGCCACCGTGTACGCGCTGCCCACCTGGGT*CTGGGCGCCTTCATCTGCAAGTTCATCCACTACTTCTTCACCGTGTCCATGCTGGTGAGC |
| CHAK00455 |
3 |
298 |
Not Confirmed |
Certain |
High |
African |
Coding |
Asn |
Ser |
Nonsynonymous |
2 |
AAT |
AGT |
U90660 |
A |
0.7 |
G |
0.3 |
ATAAACAAGTGTTCAAGTGTCACATTCGCAAAGATTCACACCTGAGTGATACTAAAGAAA*TAAAAGTCGAATAGACACCCCACCATCAACCAATTGTACTCATGTGTGATAAAAGATAGA |
| CHAK00456 |
3 |
322 |
Not Confirmed |
Likely |
Rare |
African |
Coding |
Pro |
Leu |
Nonsynonymous |
2 |
CCA |
CTA |
U90660 |
C |
0.95 |
T |
0.05 |
TTCGCAAAGATTCACACCTGAGTGATACTAAAGAAAATAAAAGTCGAATAGACACCCCAC*ATCAACCAATTGTACTCATGTGTGATAAAAGATAGAGTATCCTTATGGTTGAGTTTCCAT |
| CHAK00457 |
3 |
388 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
U90660 |
T |
0.95 |
C |
0.05 |
CCAATTGTACTCATGTGTGATAAAAGATAGAGTATCCTTATGGTTGAGTTTCCATATAAG*GGACCAGACACAGAAACAAACAGAATGAGCTAGTAAGCGATGCTGCAACTTGTTATCTTA |
| CHAK00458 |
3 |
418 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
U90660 |
C |
0.95 |
G |
0.05 |
AGTATCCTTATGGTTGAGTTTCCATATAAGTGGACCAGACACAGAAACAAACAGAATGAG*TAGTAAGCGATGCTGCAACTTGTTATCTTAACAAGAATTCAAGTCGTTTTAATTAAATCC |
| CHAK00459 |
3 |
523 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
U90660 |
G |
0.95 |
T |
0.05 |
CGTTTTAATTAAATCCCACGTGTGTTAAAAAGTACTTTGATCCATTTAGGAAATTCCTAG*TCTAGTGAGAATTATTTTTCAATTTTATTTTAGTTCTAAATTATGTTTCAGAAACAAAAG |
| CHAK00460 |
3 |
650 |
Not Confirmed |
Likely |
Low |
Both |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
U90660 |
C |
0.9 |
T |
0.1 |
CTGTACAGTTTTATTCCTCTTCAGACATGAAAGGGAACATATATATTCCATATATATGTT*AACTCTTCATAGATTGTGAACTGGCCCATCAATATGGTCAGGAATATTTGCAGTCTACAT |
| CHAK00461 |
3 |
799 |
Not Confirmed |
Likely |
Medium |
Both |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
U90660 |
A |
0.8 |
G |
0.2 |
TTTGAGCTTTAATTCTTTAATTTTAAGAGAAGTAATATTGTGAACTATGTATTTTAAAAT*TGATCATGGACACACAATGATGAATTTTTTGGCCATTTACATAGACATATCTATTAAGTG |
