| SNP Number |
Exon |
Position In Exon |
Confirmation |
Call Quality |
Heterozygosity Class |
Sample Detected |
Location In gene |
Amino Acid 1 |
Amino Acid 2 |
Type of Amino Acid Change |
Codon Position |
Codon 1 |
Codon 2 |
GenBank Accession # |
Allele 1 |
Allele 1 Frequency |
Allele 2 |
Allele 2 Frequency |
Flanking Sequence |
| CHAK00750 |
1 |
232 |
Confirmed |
Likely |
Rare |
U.S. White |
5' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86087 |
C |
0.95 |
T |
0.05 |
AACGCCGACCTCCGCCGCCGCCCGCGCCGCGTCTGCCCCCTCCCGCTGCGGCTCTCTGGA*GCCATCCCCTCCTCACCTCGAAGCCAACATGAAGGAGACCCGGGGCTACGGAGGGGATGC |
| CHAK00751 |
1 |
371 |
Confirmed |
Likely |
Rare |
African |
Coding |
Leu |
Leu |
Synonymous |
3 |
CTC |
CTG |
D86087 |
C |
0.95 |
G |
0.05 |
CAACCACTCCTACACAGGCATGTGGGCGCCCGAGCGTTCCGCCGAGGCGCGGGGCAACCT*ACGCGCCCTCCAGGGTCTGGCGAGGATTGCGGATCGGTGTCCGTGGCCTTCCCGATCACC |
| CHAK00752 |
1 |
765 |
Confirmed |
Likely |
Rare |
African |
Coding |
Met |
Leu |
Nonsynonymous |
1 |
ATG |
TTG |
D86087 |
A |
0.95 |
T |
0.05 |
AGCGCCATGGCCGTCGAGCGGGCGCTGGCCATCAGGGCGCCGCACTGGTATGCGAGCCAC*TGAAGACGCGTGCCACCCGCGCTGTGCTGCTCGGCGTGTGGCTGGCCGTGCTCGCCTTCG |
| CHAK00753 |
1 |
878 |
Confirmed |
Certain |
Low |
African |
Coding |
Thr |
Thr |
Synonymous |
3 |
ACG |
ACT |
D86087 |
G |
0.9 |
T |
0.1 |
CGCCTTCGCCCTGCTGCCGGTGCTGGGCGTGGGCCAGTACACCGTCCAGTGGCCCGGGAC*TGGTGCTTCATCAGCACCGGGCGAGGGGGCAACGGGACTAGCTCTTCGCATAACTGGGGC |
| CHAK00754 |
10 |
206 |
Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86096 |
T |
0.95 |
C |
0.05 |
CCCCAAATATAACTGTTATCCAGAAGCTGTTATGTCCTGTTTCCATACATGTTTTTGTAC*TTTACTATATCTACATACATCAATTAAACTTATGTCCTATTGTTTTGTGAATTTATATTT |
| CHAK00755 |
10 |
281 |
Confirmed |
Likely |
Low |
Both |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86096 |
A |
0.95 |
G |
0.05 |
ATACATCAATTAAACTTATGTCCTATTGTTTTGTGAATTTATATTTGCGTATACATTATC*TATGTAAAATTTGCATTTTTTTATTGAAAATTATGTTTCTTGAGATTTATCCACATTGAA |
| CHAK00756 |
2 |
326 |
Not Confirmed |
Certain |
Medium |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.85 |
A |
0.15 |
ATGAAAGAAAACACTTAACTTGCATGTGCACAGCTTTTGGTAACAAATATCGCTAAACCT*ACTGTGAATTTAGGCATCTCTGGCATGCCACTGTTTATGCATTGAAGTGGAATTTTTGGT |
| CHAK00757 |
2 |
557 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
G |
0.95 |
T |
0.05 |
CATTCGTAGCTGAATATGTGATTAATTATGTGATGAAAACATTTTTTATAAATGATCTTG*TCTATTGGGGAGCGGGGATAGTTAATATTCCAGTACACTGAATACATGAGGAATTTAACC |
| CHAK00758 |
2 |
628 |
Not Confirmed |
Likely |
Low |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.9 |
C |
0.1 |
AGCGGGGATAGTTAATATTCCAGTACACTGAATACATGAGGAATTTAACCACATACATCA*TGAAGACAAGGGATAGCAGTTTGTTTTTATTCAAAGACATTGCTGTGTTCTCTTTCATTG |
| CHAK00759 |
2 |
769 |
Not Confirmed |
Likely |
Low |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.9 |
A |
0.1 |
TTTTTTCCTCCTTACATTAAAGAAAAGTTTAATTACAGTTAAAAATGTATAATGTATTTA*AATATTCATCGATACCATTATTCAAATATTGCTCAATACAGCAAATTAGCTCCTAACCTA |
| CHAK00760 |
2 |
787 |
Not Confirmed |
Likely |
Low |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.95 |
G |
0.05 |
AAAGAAAAGTTTAATTACAGTTAAAAATGTATAATGTATTTATAATATTCATCGATACCA*TATTCAAATATTGCTCAATACAGCAAATTAGCTCCTAACCTAACAAAGTTTAAGTTTACT |
| CHAK00761 |
2 |
805 |
Not Confirmed |
Likely |
Low |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
A |
0.9 |
C |
0.1 |
AGTTAAAAATGTATAATGTATTTATAATATTCATCGATACCATTATTCAAATATTGCTCA*TACAGCAAATTAGCTCCTAACCTAACAAAGTTTAAGTTTACTTGGATTGATAATTAGGTT |
| CHAK00762 |
2 |
850 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
G |
0.95 |
A |
0.05 |
TTCAAATATTGCTCAATACAGCAAATTAGCTCCTAACCTAACAAAGTTTAAGTTTACTTG*ATTGATAATTAGGTTTACTCTTTATCTGAATAAGAACCAATTCCATTTGTTTGAAATATG |
| CHAK00763 |
2 |
852 |
Not Confirmed |
Certain |
High |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.5 |
A |
0.5 |
CAAATATTGCTCAATACAGCAAATTAGCTCCTAACCTAACAAAGTTTAAGTTTACTTGGA*TGATAATTAGGTTTACTCTTTATCTGAATAAGAACCAATTCCATTTGTTTGAAATATGGA |
| CHAK00764 |
2 |
855 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
A |
0.95 |
T |
0.05 |
ATATTGCTCAATACAGCAAATTAGCTCCTAACCTAACAAAGTTTAAGTTTACTTGGATTG*TAATTAGGTTTACTCTTTATCTGAATAAGAACCAATTCCATTTGTTTGAAATATGGAGTT |
| CHAK00765 |
2 |
1293 |
Not Confirmed |
Certain |
High |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.35 |
C |
0.65 |
ACAGCTCTTCTGCCTGCTCCTCAAGAGGCTCTATCTAATATTTATTACTAAAATGTTTTT*CTACAGTCTACATGAATACAAACCTCAATAGCTAAGCTTGACGTATTTGTGCACAAGTAG |
| CHAK00766 |
2 |
1295 |
Not Confirmed |
Certain |
Medium |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.75 |
C |
0.25 |
AGCTCTTCTGCCTGCTCCTCAAGAGGCTCTATCTAATATTTATTACTAAAATGTTTTTTC*ACAGTCTACATGAATACAAACCTCAATAGCTAAGCTTGACGTATTTGTGCACAAGTAGAT |
| CHAK00767 |
2 |
1393 |
Not Confirmed |
Likely |
Medium |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.8 |
C |
0.2 |
GACGTATTTGTGCACAAGTAGATCACTACATTAAGTTTTGGGAATTGCACTTCTTAAAAA*GTCTCCCCACCAAACATAGTAATCCTGTAGTTATGCCTACACAAAGCTTGCCATATTCTT |
| CHAK00768 |
2 |
1403 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
C |
0.95 |
A |
0.05 |
TGCACAAGTAGATCACTACATTAAGTTTTGGGAATTGCACTTCTTAAAAATGTCTCCCCA*CAAACATAGTAATCCTGTAGTTATGCCTACACAAAGCTTGCCATATTCTTTGGTCGATTC |
| CHAK00769 |
2 |
1614 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.95 |
C |
0.05 |
TTTATACTTCTTGTAGTAACTGCATATTTCTGTGTGTGTTTAGTGGTAAAGAATTAATTT*GATAGGTACAATATGTCTATCAGATTGATATATACACCAGCCTATGTCAATTGGGGCTAA |
| CHAK00770 |
2 |
1719 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
G |
0.95 |
C |
0.05 |
TGTCAATTGGGGCTAATTATTTTAAATGACCATGTCAAATTGAATTTGGAGACAAAATCT*TTGAGAGTGCTTATGTAATTAATGATGGTTCTACTAACTAAATTTTGGAAAAGGTGATAA |
| CHAK00771 |
2 |
2153 |
Not Confirmed |
Likely |
Rare |
U.S. White |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
A |
0.95 |
G |
0.05 |
ATTGGCAAGGCACATACCATATGATTGAAGTGCTTCATGCCATTACAGTCCATCAGGCTG*TAAAGTGAATTATTTCTGATTATTTAATTACAGAAATATGAATTTATCTTCAAGGGGTTA |
| CHAK00772 |
2 |
2517 |
Not Confirmed |
Likely |
Low |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.9 |
C |
0.1 |
TGGAAAACAAAGAAATTATGTAAATGGCATATGAGTTTTTATTATCTAGGCATTCGTTAG*ATGGGGAAACCTGATAAGAAATGAAAATCCCAAATGATTTCAGCCTTTTCATGATGGTTG |
| CHAK00773 |
2 |
3069 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.95 |
C |
0.05 |
GTTGAAGAAACACAAATGAGTTATCTCAATATTTACCAAGTTAACCTAGTGCTGTATATA*CCCAAGATATTTTAGGTAAATGTAAGTGTTTAATCATGCCAGATTTAAACTAGTCTGAAA |
| CHAK00774 |
2 |
3101 |
Not Confirmed |
Certain |
Low |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
A |
0.9 |
G |
0.1 |
TTACCAAGTTAACCTAGTGCTGTATATATCCCAAGATATTTTAGGTAAATGTAAGTGTTT*ATCATGCCAGATTTAAACTAGTCTGAAATATAGGGTATACATATATTTCTACTTACATTT |
| CHAK00775 |
2 |
3282 |
Not Confirmed |
Likely |
Rare |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
A |
0.95 |
G |
0.05 |
AACTATGAAAGATCCTGTGAGCACATTGGCATTGAGTGACAGACAAACTAAAAACTGGCA*ACAGTATTTTAATAAGGGGGTCACTCTGTGGCAGTATTCTAATATTGGATTTTCAAGTAG |
| CHAK00776 |
2 |
3382 |
Not Confirmed |
Certain |
High |
Both |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86088 |
T |
0.45 |
C |
0.55 |
TAATATTGGATTTTCAAGTAGATTAGGCTTTTTATTTATTCAACGCTTTTTATAATTTTG*TCTTTTTGACTCCAAATTATTGGTCAGCTTTCAACCTTCTCCACATCAGCAATCACTAAT |
| CHAK00777 |
3 |
76 |
Not Confirmed |
Likely |
Low |
African |
N/A |
Pro |
Leu |
Nonsynonymous |
2 |
CCC |
CTC |
D86089 |
C |
0.95 |
T |
0.05 |
CTGTCTGTTCACAGATCAGGTACCACACAAACAACTATGCATCCAGCTCCACCTCCTTAC*CTGCCAGTGTTCCTCAACCTTGATGTGGAGCGACCATTTGGAAAGGTGAGATTTAGAAAC |
| CHAK00778 |
3 |
80 |
Not Confirmed |
Certain |
Low |
African |
Coding |
Cys |
Cys |
Synonymous |
3 |
TGC |
TGT |
D86089 |
C |
0.9 |
T |
0.1 |
CTGTTCACAGATCAGGTACCACACAAACAACTATGCATCCAGCTCCACCTCCTTACCCTG*CAGTGTTCCTCAACCTTGATGTGGAGCGACCATTTGGAAAGGTGAGATTTAGAAACTGCC |
| CHAK00779 |
4 |
94 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86090 |
C |
0.95 |
T |
0.05 |
GAAAGAACGGAGTTGGACATTTTATTGCAATTCCTGCTTCCCTGAATTTGCATATTTCTT*CCACCTGAGAAGGATAATTATATATTTTAATTTGGATTATTTCTTCATTTTTATCTTTTT |
| CHAK00780 |
4 |
719 |
Not Confirmed |
Certain |
Medium |
Both |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86090 |
G |
0.8 |
T |
0.2 |
TAGTTATGTGTCATTTAGTAACTCAGGAATCTGCTTAATTGTTATTTCTAAGCTTTTGAT*ACAAAGGAGTGATGCAGCTAAGGGCATCCTTGGAGTGTCATAAAAAACAAATTTGAGGTT |
| CHAK00781 |
6 |
197 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86092 |
A |
0.95 |
G |
0.05 |
GAATCTCAACAGTAAAGACAGAATAACATGAAGAAAATAACTACAGGAGTGCTGTGTTTT*AAAAAGCAAGCTCCTCCAGCTGAGTTTGTGACTCTAATCCCTGCTTATTTTGAGCACTTT |
| CHAK00782 |
6 |
300 |
Confirmed |
Certain |
Medium |
Both |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86092 |
G |
0.8 |
A |
0.2 |
GCTTATTTTGAGCACTTTCCATGTGTTGATTGACTCGGAAAGGTGGGAGATTACCAGCAA*CCAGGTCATTTCCGGGCAAACATGGGCATATTTTTAGCAAAGCTGAACAAACTGGTTGGT |
| CHAK00783 |
6 |
387 |
Not Confirmed |
Likely |
Rare |
African |
3' UTR |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86092 |
T |
0.95 |
A |
0.05 |
CATATTTTTAGCAAAGCTGAACAAACTGGTTGGTCACTCGAACTACCCAATTTAGACTTA*AGTAAGAATAGCACATGGTTCAGAATTGCCAAGACTGCTGCTTTAGTCAACAGAAATTTT |
| CHAK00784 |
7 |
85 |
Not Confirmed |
Likely |
Rare |
African |
Coding |
His |
Arg |
Nonsynonymous |
2 |
CAT |
CGT |
D86093 |
A |
0.95 |
G |
0.05 |
CTGATGGAAGGTGTTTTTGTCATGCATGGAGGCAGGTCCCCAGGACTTGGTGCAGTTCTC*TGATAGTGAGTGAGTTCTTGCAAAATTTGGTTGTTGTAAA |
| CHAK00785 |
8 |
116 |
Not Confirmed |
Certain |
Medium |
U.S. White |
Coding |
Pro |
Pro |
Synonymous |
3 |
CCC |
CCT |
D86094 |
C |
0.85 |
T |
0.15 |
GATTGATCCTTCAAGGTTCTGTGCTCAGCCCTTCCGTTGGTTCTTGGATTTGTCCTTTCC*GCCATGTCTTCATCACATCCACAACTTCCACTAACACTTGCGAGCTTCAAACTTCTTAGT |
| CHAK00786 |
9 |
16 |
Not Confirmed |
Likely |
Low |
African |
Intron |
N/A |
N/A |
N/A |
0 |
N/A |
N/A |
D86095 |
T |
0.9 |
C |
0.1 |
ATTGCCTATCACATAA*AGGAGAACCCTGCAGTGTCCAGCTAAGCTGATGACTTGAAGATAAATCTGCCTAACCCTGGGATGAAGTATCTGTGAACTATTTTGACAGCAGATGTA |