生物信息数据库集锦(2002)



生物信息数据库集锦(2002) 近几年来，随着人类基因组计划和蛋白质组工程的实施，生物信息资源不断膨胀，生物信息学的重要性日益突出。而国内外相关的生物信息数据库的数目也日益膨胀，其中有如NCBI、EMBL、SWISS－PROT等各专业中最为知名的大型数据中心，更多的，是一些从小处入手的更为专业的二级数据库。为帮助大家了解并有效利用这些数据库资源，CMBI从Nucleic Acids Research等杂志中摘录了各专业相关网站的评述近二百篇供各位用户选择，希望大家可以从中找到自己工作所需的数据库。(更多生物医学信息网站请查询Amos' WWW Links)
Database Category Comparative Genomics Gene Expression Gene Identification and Structure Genetic and Physical Maps Genomic Databases Intermolecular Interactions Major Sequence Repositories-1 Metabolic Pathways and Cellular Regulation Mutation Databases Pathology Protein Sequence Motifs Proteome Resources Retrieval Systems and Database Structure RNA Sequences Structure Transgenics Varied Biomedical Content Alphabetical Database List Protein Databases Database Reference 5S Ribosomal RNA Database A comprehensive leukemia database AngioDB-database of angiogenesis and angiogenesis-related molecules Annotating the human proteome-the Human Proteome Survey Database (HumanPSDTM) and an in-depth target database for G protein-coupled receptors (GPCR-PDTM) from Incyte Genomics AraC-XylS database-a family of positive transcriptional regulators in bacteria ASPD (Artificially Selected Proteins-Peptides Database)-a database of proteins and peptides evolved in vitro ASTRAL compendium enhancements BRENDA, enzyme data and metabolic information CDD-a database of conserved domain alignments with links to domain three-dimensional structure Celera Discovery SystemTM CKAAPs DB-a Conserved Key Amino Acid Positions DataBase Comparative Genometrics (CG)-a database dedicated to biometric comparisons of whole genomes CSDBase-an interactive database for cold shock domain-containing proteins and the bacterial cold shock response Database resources of the National Center for Biotechnology Information-2002 update DBTSS-DataBase of human Transcriptional Start Sites and full-length cDNAs DIP, the Database of Interacting Proteins-a research tool for studying cellular networks of protein interactions DNA Data Bank of Japan (DDBJ) for genome scale research in life science DT40 web site-sampling and connecting the genes of a B cell line EcoCyc Database Ensembl genome database project euGenes-a eukaryote genome information system Eukaryotic Promoter Database, EPD European database on small subunit ribosomal RNA ExInt-an Exon Intron Database EXProt-a database for proteins with an experimentally verified function FANTOM DB-database of Functional Annotation of RIKEN Mouse cDNA Clones FIMM, a database of functional molecular immunology update 2002 FLAGdb-FST-a database of mapped flanking insertion sites (FSTs) of Arabidopsis FlyBase database of the Drosophila genome projects and community literature FUGOID-functional genomics of organellar introns database GenBank Gene Expression Omnibus-NCBI gene expression and hybridization array data repository Gene Resource Locator-gene locus maps for transcriptome analysis GeneNet-a database on structure and functional organisation of gene networks Genew-the Human Gene Nomenclature Database Genome Information Broker (GIB)-data retrieval and comparative analysis system for completed microbial genomes and more Genomic and Proteomic Databases; Large-Scale Analysis and Integration of Data Genomic database resources for Dictyostelium discoideum Gramene-a resource for comparative grass genomics GTOP-a database of protein structures predicted from genome sequences HERVd-database of human endogenous retroviruses HGVbase-a human sequence variation database emphasizing data quality and a broad spectrum of data sources Histone Database Homophila-human disease gene cognates in Drosophila HOWDY-an integrated database system for human genome research HOX Pro DB-the functional genomics of hox ensembles HUGE-a database for human large proteins identified in the Kazusa cDNA sequencing project HugeIndex-a database with visualization tools for high-density oligonucleotide array data from normal human tissues human (PEDB) and mouse (mPEDB) Prostate Expression Databases IDR-the ImmunoDeficiency Resource IMB Jena Image Library of Biological Macromolecules-2002 update InBase-the Intein Database JSNP-a database of common gene variations in the Japanese population KEGG databases at GenomeNet LIGAND-database of chemical compounds and reactions in biological pathways MAGEST-Maboya Gene Expression patterns and Sequence Tags MagnaportheDB-a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea MDB-a database system utilizing automatic construction of modules and STAR-derived universal language MDB-the Metalloprotein Database and Browser at The Scripps Research Institute MEROPS-the protease database MIPS-a database for genomes and protein sequences MIPS Arabidopsis thaliana Database (MAtDB)-an integrated biological knowledge resource MitoNuc-a database of nuclear genes coding for mitochondrial proteins. Update 2002 MMDB-Entrez’s 3D-structure database MODBASE, a database of annotated comparative protein structure models Molecular Biology Database Collection-2002 update NCIR-a database of non-canonical interactions in known RNA structures NUREBASE-database of nuclear hormone receptors Olfactory Receptor Database-a metadata-driven automated population from sources of gene and protein sequences Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders PALS db-Putative Alternative Splicing database PASS2-a semi-automated database of Protein Alignments Organised as Structural Superfamilies Pfam Protein Families Database PharmGKB-the Pharmacogenetics Knowledge Base PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences PLANT-PIs-a database for plant protease inhibitors and their genes PlasmoDB-the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data Predictome-a database of putative functional links between proteins PRINTS and PRINTS-S shed light on protein ancestry Progenetix.net-an online repository for molecular cytogenetic aberration data PROSITE database, its status in 2002 Protein Data Bank-unifying the archive Protein Information Resource-an integrated public resource of functional annotation of proteins ProTherm, Thermodynamic Database for Proteins and Mutants quest to deduce protein function from sequence-the role of pattern databases Rat Genome Database (RGD)-mapping disease onto the genome READ-RIKEN Expression Array Database Recent improvements to the SMART domain-based sequence annotation resource RiceGAAS-an automated annotation system and database for rice genome sequence RIDOM-Ribosomal Differentiation of Medical Micro-organisms Database Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO) SCOP database in 2002-refinements accommodate structural genomics SCOR-a Structural Classification of RNA database SELEX_DB-a databaseon in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data Sentra, a database of signal transduction proteins S-MARt DB-a database on scaffold-matrix attached regions SubtiList-the reference database for the Bacillus subtilis genome SUPERFAMILY-HMMs representing all proteins of known structure suPFAM—a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families SWEET-DB-an attempt to create annotated data collections for carbohydrates SYSTERS, GeneNest, SpliceNest-exploring sequence space from genome to protein tGRAP, the G-protein coupled receptors mutant database The androgen receptor gene mutations database The EMBL Nucleotide Sequence Database The MetaCyc Database The Mouse Genome Database (MGD)-the model organism database for the laboratory mouse The SBASE protein domain library, release 9.0-an online resource for protein domain identification The tmRNA Website-invasion by an intron TRANSCompel-a database on composite regulatory elements in eukaryotic genes Transcription Regulatory Regions Database (TRRD) Transterm-a database of mRNAs and translational control elements TRIPLES database-a community resource for yeast molecular biology TTD-Therapeutic Target Database Update of AMmtDB-a database of multi-aligned Metazoa mitochondrial DNA sequences UTRdb and UTRsite-specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs VirOligo-a database of virus-specific oligonucleotides Wanda-a database of duplicated fish genes yMGV-helping biologists with yeast microarray data mining YPL.db-the Yeast Protein Localization database
更新于 2002-02-10