基因分析相关数据库

DNA相关数据库
蛋白相关数据库
序列分析工具


DNA相关数据库

  • DNA序列通用数据库
    • GenBank - DNA sequence database (NCBI)
    • EMBL - DNA sequence database (EBI)
    • DDBJ - Japan DNA sequence database 
    • TIGR - The TIGR Databases containing DNA and protein sequence, gene expression, cellular role, proteinfamily, and taxonomic data for microbes, plants and humans. 
    • GSDB - DNA sequences and derived protein sequences (NCGR)
    • GeneCard - Human genes, maps, proteins and diseases (Weizmann)
    • GDB - An international collaboration in support of the Human Genome Project (Johns Hopkins University)
  • DNA序列相关数据库
    • ACUTS - Ancient conserved untranslated DNA sequences database
    • CUTG - Codon usage database
    • EPD - Eukaryotic Promoter database
    • HOVERGEN - Homologous Vertebrate Genes database
    • REBASE - restriction enzymes and methylases
    • TRRD - Regulatory regions and expression patterns of eukaryotic genes
    • Vertebrate MitBASE - Vertebrate mitochondrial DNA sequences and associated information
    • AMmtDB - Vertebrate mitochondrial DNA sequence alignment 
    • MPDB - Molecular probe database
    • OPD - Oligonucleotide probe database
    • VectorDB - Vector sequence database

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蛋白相关数据库

  • 蛋白质通用数据库
    • SWISS-PROT - SWISS-PROT annotated protein sequence database
    • PIR-international - Protein sequence database co-developed by NBRF, MIPS and JIPID
    • MIPS - Protein sequences and complete genomic sequences
  • 蛋白相关数据库
    • PROSITE - PROSITE dictionary of protein sites and patterns
    • BLOCKS - BLOCKS database
    • DOMO - Protein domain database (Automatically generated)
    • Pfam - Protein families database (HMM derived)
    • PRINTS - Protein Motif fingerprint database
    • ProDom - Protein domain database (Automatically generated)
    • PROTOMAP - An automatic hierarchical classification of SWISS-PROT proteins
    • SMART - Protein signalling and extracellular domain patterns
  • 2D与3D结构数据库
    • PDB - Protein Data Bank
    • BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy
    • SWISS-MODEL Repository - Automatically generated protein models database
    • CATH - Univ College London BSM structural classification of proteins
    • SCOP - Structural classification of proteins
    • Mol_R_Us - Molecule R Us, browser for PDB
    • BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server
    • ReLiBase - Receptor/ligand complexes database
    • TOPS - Topology cartoons diagrams
    • CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Database (CSD))
    • SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules
    • BioImage - European biological image database (contains microelectroscopic imaging data on macromolecules)
  • 其它数据库
    • KEGG - Kyoto Encyclopedia of Genes and Genomes database
    • LIGAND
    • EcoCyc - Escherichia coli genes and metabolism
    • UM-BBD - Microbial biocatalytic reactions of, and biodegrative pathways for organic compounds
    • MPW - Metabolic pathways
    • Kabat - Kabat database of protein of immunological interest
    • OMIM - Online Mendelian Inheritance in Man
    • PMD - Protein Mutation database
    • PROLYSIS － A protease and protease inhibitor Web server
    • DIP - Database of Interacting Proteins
    • PRESAGE - Collaborative Database of experimental data on proteins 

　

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序列分析工具

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